LOC100415631 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000022240 T35701_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMX
M344_0.6 		Homo sapiens CCM SELEX
Cook et al.(2011)
922_19282290 		0.915
RBMY1A1
M247_0.6 		Homo sapiens CWCAA SELEX
Cook et al.(2011)
1053_17318228 		0.746
RBMY1A1
M246_0.6 		Homo sapiens CWCAA SELEX
Cook et al.(2011)
1052_17318228 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000040892 RRM 10 80

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R020019 Ailuropoda melanoleuca Ame_R020019 I 0.746
Ame_R008043 Ailuropoda melanoleuca Ame_R008043 I 0.915
ENSACAG00000009551 Anolis carolinensis ENSACAG00000009551 I 0.915
HNRPG_BOVIN Bos taurus ENSBTAG00000036140 I 0.930
HNRPG_BOVIN Bos taurus ENSBTAG00000011807 I 0.930
D3JUI8_BOVIN Bos taurus ENSBTAG00000013308 I 0.915
RBMXL1 Callithrix jacchus ENSCJAG00000032899 I 0.915
ENSCJAG00000016247 Callithrix jacchus ENSCJAG00000016247 I 0.817
ENSCJAG00000013619 Callithrix jacchus ENSCJAG00000013619 I 0.831
LOC100406653 Callithrix jacchus ENSCJAG00000003626 I 0.915
RBMXL3 Callithrix jacchus ENSCJAG00000006948 I 0.761
RBMXL1 Canis familiaris ENSCAFG00000018962 I 0.903
RBMX Cavia porcellus ENSCPOG00000012164 I 0.915
rbmx Danio rerio ENSDARG00000014244 I 0.789
RBMXL1 Dasypus novemcinctus ENSDNOG00000017199 I 0.915
ENSDNOG00000009042 Dasypus novemcinctus ENSDNOG00000009042 I 0.817
Rbmxl2 Dipodomys ordii ENSDORG00000010267 I 0.887
LOC100054583 Equus caballus ENSECAG00000021380 I 0.915
RBMX Felis catus ENSFCAG00000004779 I 0.817
Q5ZKQ9_CHICK Gallus gallus ENSGALG00000006457 I 0.915
RBMXL3 Gasterosteus aculeatus ENSGACG00000017237 I 0.845
RBMXL3 Gorilla gorilla ENSGGOG00000027260 I 0.845
Q2VIN1_9PRIM Gorilla gorilla ENSGGOG00000012016 I 0.887
RBMXL1 Gorilla gorilla ENSGGOG00000027619 I 0.915
RBMY1A1 Homo sapiens ENSG00000234414 D 0.732
RBMXL1 Homo sapiens ENSG00000213516 I 0.887
RBMX Homo sapiens ENSG00000147274 D 0.915
RBMY1F Homo sapiens ENSG00000169800 I 0.718
RBMXL2 Homo sapiens ENSG00000170748 I 0.972
RBMXL3 Homo sapiens ENSG00000175718 I 0.859
RBMY1J Homo sapiens ENSG00000226941 I 0.718
RBMY1D Homo sapiens ENSG00000244395 I 0.732
RBMY1B Homo sapiens ENSG00000242875 I 0.732
RBMY1E Homo sapiens ENSG00000242389 I 0.732
ENSLAFG00000022169 Loxodonta africana ENSLAFG00000022169 I 0.873
ENSLAFG00000020807 Loxodonta africana ENSLAFG00000020807 I 0.803
ENSLAFG00000014037 Loxodonta africana ENSLAFG00000014037 I 0.873
ENSLAFG00000005568 Loxodonta africana ENSLAFG00000005568 I 0.915
ENSMEUG00000015892 Macropus eugenii ENSMEUG00000015892 I 0.859
O97560_MACEU Macropus eugenii ENSMEUG00000013834 I 0.859
RBMX Meleagris gallopavo ENSMGAG00000003594 I 0.915
RBMXL1 Microcebus murinus ENSMICG00000006856 I 0.915
XM_001367159.1 Monodelphis domestica ENSMODG00000014054 I 0.859
Rbmx Mus musculus ENSMUSG00000031134 I 0.915
Rbmxrt Mus musculus ENSMUSG00000037070 I 0.901
ENSMUSG00000049235 Mus musculus ENSMUSG00000049235 I 0.901
Rbmxl2 Mus musculus ENSMUSG00000073894 I 0.887
RBMXL1 Myotis lucifugus ENSMLUG00000013209 I 0.915
ENSOANG00000011670 Ornithorhynchus anatinus ENSOANG00000011670 I 0.915
ENSOCUG00000021095 Oryctolagus cuniculus ENSOCUG00000021095 I 0.915
RBMX Oryctolagus cuniculus ENSOCUG00000024093 I 0.915
ENSOCUG00000028230 Oryctolagus cuniculus ENSOCUG00000028230 I 0.915
RBMXL1 Oryctolagus cuniculus ENSOCUG00000007220 I 0.915
RBMXL3 Oryzias latipes ENSORLG00000001692 I 0.845
RBMX Pan troglodytes ENSPTRG00000034071 I 0.859
XR_020159.1 Pan troglodytes ENSPTRG00000032591 I 0.746
ENSPTRG00000032590 Pan troglodytes ENSPTRG00000032590 I 0.746
XR_019934.1 Pan troglodytes ENSPTRG00000032589 I 0.746
XR_020119.1 Pan troglodytes ENSPTRG00000028826 I 0.746
Q52NW1_PANTR Pan troglodytes ENSPTRG00000028822 I 0.746
ENSPTRG00000028821 Pan troglodytes ENSPTRG00000028821 I 0.732
LOC750990 Pan troglodytes ENSPTRG00000028802 I 0.746
XR_023586.1 Pan troglodytes ENSPTRG00000004121 I 0.873
RBMXL2 Pan troglodytes ENSPTRG00000003312 I 0.972
HNRPG_PANTR Pan troglodytes ENSPTRG00000000933 I 0.887
ENSPPYG00000001177 Pongo pygmaeus ENSPPYG00000001177 I 0.887
ENSPPYG00000019152 Pongo pygmaeus ENSPPYG00000019152 I 0.873
ENSPPYG00000020771 Pongo pygmaeus ENSPPYG00000020771 I 0.915
Rbmxrtl Rattus norvegicus ENSRNOG00000012138 I 0.887
D3ZT57_RAT Rattus norvegicus ENSRNOG00000021946 I 0.859
D4AE41_RAT Rattus norvegicus ENSRNOG00000028858 I 0.887
Rbmx Rattus norvegicus ENSRNOG00000000866 I 0.915
RBMXL1 Sus scrofa ENSSSCG00000012703 I 0.915
RBMX Taeniopygia guttata ENSTGUG00000002135 I 0.915
RBMXL3 Takifugu rubripes ENSTRUG00000006031 I 0.831
RBMX Tarsius syrichta ENSTSYG00000009555 I 0.901
RBMXL3 Tetraodon nigroviridis ENSTNIG00000016844 I 0.817
ENSTBEG00000001154 Tupaia belangeri ENSTBEG00000001154 I 0.817
RBMXL1 Tursiops truncatus ENSTTRG00000007322 I 0.915
ENSTTRG00000003238 Tursiops truncatus ENSTTRG00000003238 I 0.901
ENSVPAG00000002726 Vicugna pacos ENSVPAG00000002726 I 0.817
RBMXL1 Vicugna pacos ENSVPAG00000005826 I 0.915
AAH70649 Xenopus laevis AAH70649 I 0.845