CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSG00000250177
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000250177
T37374_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.731
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.707
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.707
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.707
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000426553
RRM
12
82
LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIR
ENSP00000426553
RRM
100
168
VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVF
ENSP00000426553
RRM
192
261
VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIF
ENSP00000426553
RRM
295
363
LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002890939.1
Arabidopsis lyrata
scaffold_103602.1
N
0.000
AT1G32360
Arabidopsis thaliana
AT1G32360-TAIR-G
N
0.000
BRADI3G16360
Brachypodium distachyon
BRADI3G16360
N
0.000
BRADI3G16377
Brachypodium distachyon
BRADI3G16377
N
0.000
PK04103.1
Cannabis sativa
PK04103.1
N
0.000
Cucsa.312990
Cucumis sativus
Cucsa.312990
N
0.000
Glyma01g10610.1
Glycine max
Glyma01g10610.1
N
0.000
chr4.LjT10E08.110.nc
Lotus japonicus
chr4.LjT10E08.110.nc
N
0.000
MDP0000209929
Malus x domestica
MDP0000209929
N
0.000
MDP0000706016
Malus x domestica
MDP0000706016
N
0.000
cassava5467.m1
Manihot esculenta
cassava5467.m1
N
0.000
cassava25690.m1
Manihot esculenta
cassava25690.m1
N
0.000
Medtr8g078060
Medicago truncatula
Medtr8g078060
N
0.000
mgf012162m
Mimulus guttatus
mgf012162m
N
0.000
mgf003951m
Mimulus guttatus
mgf003951m
N
0.000
BGIOSIBCE026569
Oryza indica
BGIOSIBCE026569
N
0.000
LOC_Os08g06330
Oryza sativa
LOC_Os08g06330
N
0.000
estExt_fgenesh1_pg.C_430142
Physcomitrella patens
estExt_fgenesh1_pg.C_430142
N
0.000
B9GZ92_POPTR
Populus trichocarpa
POPTR_0003s09240
N
0.000
B9MU37_POPTR
Populus trichocarpa
POPTR_0001s02330
N
0.000
ppa008182m
Prunus persica
ppa008182m
N
0.000
30054.m000804
Ricinus communis
30054.m000804
N
0.000
gw1.11.272.1
Selaginella moellendorfii
gw1.11.272.1
N
0.000
GSVIVG00013136001
Vitis vinifera
GSVIVG00013136001
N
0.000