ENSMICG00000016633 (Microcebus murinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMICG00000016633 T38590_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.846
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.846
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.846
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000015164 RRM 13 83
ENSMICP00000015164 RRM 101 169
ENSMICP00000015164 RRM 193 250
ENSMICP00000015164 RRM 284 352

Links

Other RRM family RBPs
Other Microcebus murinus RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.953
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.953
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.953
LOC100054235 Equus caballus ENSECAG00000009396 I 0.953
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.950
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.950
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.946
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.946
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.946
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.946
PABPC4 Homo sapiens ENSG00000090621 D 0.946
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.946
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.943
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.943
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.943
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.935
Gm10110 Mus musculus ENSMUSG00000062093 I 0.932
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.932
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.928
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.910
PABPC4 Gallus gallus ENSGALG00000003800 I 0.896
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.893
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.892
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.892
AAH73435 Xenopus laevis AAH73435 I 0.885
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.882
pabpc4 Danio rerio ENSDARG00000059259 I 0.875
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.871
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.871
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.867
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.867
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.849
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.849
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.849
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.849
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.849
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.846
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.846
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.846
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.846
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.846
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.846
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.846
PABPC1 Homo sapiens ENSG00000070756 D 0.846
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.846
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.846
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.846
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.846
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.846
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.843
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.842
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.835
AAH72110 Xenopus laevis AAH72110 I 0.832
AAI08463 Xenopus laevis AAI08463 I 0.832
Q6IP09 Xenopus laevis Q6IP09 I 0.832
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.828
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.824
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.817
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.817
pabpc1a Danio rerio ENSDARG00000017219 I 0.817
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.817
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.817
AAH52100 Xenopus laevis AAH52100 I 0.817
CAA40721 Xenopus laevis CAA40721 I 0.817
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.817
P20965 Xenopus laevis P20965 I 0.817
AAA60936 Xenopus laevis AAA60936 I 0.814
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.810
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.810
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.810
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.810
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.810
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.810
pabpc1b Danio rerio ENSDARG00000021140 I 0.807
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.806
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.799
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.796
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.796
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.792
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.792
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.792
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.792
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.792
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.789
PABPC1L Gallus gallus ENSGALG00000004123 I 0.789
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.789
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.786
Q6GR16 Xenopus laevis Q6GR16 I 0.781
AAH71118 Xenopus laevis AAH71118 I 0.781
PABPC3 Homo sapiens ENSG00000151846 D 0.781
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.778
AAK29408 Xenopus laevis AAK29408 I 0.778
Q98SP8 Xenopus laevis Q98SP8 I 0.778
AAH80020 Xenopus laevis AAH80020 I 0.778
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.777
pabpc1l Danio rerio ENSDARG00000002597 I 0.774
PABPC1L Bos taurus ENSBTAG00000016849 I 0.771
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.771
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.771
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.771
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.771
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.771
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.767
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.767
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.763
LOC100070836 Equus caballus ENSECAG00000022681 I 0.763
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.763
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.760
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.760
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.760
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.756
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.756
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.756
PABPC1L Homo sapiens ENSG00000101104 I 0.756
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.756
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.756
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.753
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.753
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.753
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.753
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.751
PHUM617090 Pediculus humanus PHUM617090 I 0.749
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.749
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.746
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.746
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.746
ISCW014211 Ixodes scapularis ISCW014211 I 0.736
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.735
AAEL010318 Aedes aegypti AAEL010318 I 0.735
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.735
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.735
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.731
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.731
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.731
LOC100056021 Equus caballus ENSECAG00000020699 I 0.731
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.731
AGAP011092 Anopheles gambiae AGAP011092 I 0.728
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.724
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.724
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.714
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.714
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.713
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.713
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.711
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.711
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.711
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.710
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.710
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.707
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.707
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.707
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.707
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.707
GJ21671 Drosophila virilis FBgn0208790 I 0.701
GH21052 Drosophila grimshawi FBgn0128514 I 0.701