XM_001153149.1 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000034109 T40820_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.984
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.906
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000059461 RRM 18 81

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.750
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.734
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.906
RALY Anolis carolinensis ENSACAG00000008983 I 0.734
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.906
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.750
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.000
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.875
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.906
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.734
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.734
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.906
RALY Canis familiaris ENSCAFG00000007490 I 0.750
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.734
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.891
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.891
RALY Cavia porcellus ENSCPOG00000000309 I 0.750
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.750
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.750
zgc:55733 Danio rerio ENSDARG00000022579 I 0.812
raly Danio rerio ENSDARG00000059972 I 0.719
zgc:55701 Danio rerio ENSDARG00000053810 I 0.750
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.734
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.734
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.906
Raly Dipodomys ordii ENSDORG00000013400 I 0.750
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.750
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.734
RALYL Echinops telfairi ENSETEG00000014028 I 0.750
LOC100054239 Equus caballus ENSECAG00000012357 I 0.750
LOC100059269 Equus caballus ENSECAG00000017645 I 0.906
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.891
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.750
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.719
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
RALY Gallus gallus ENSGALG00000002054 I 0.734
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.750
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.797
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.734
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.000
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.969
RALY Gorilla gorilla ENSGGOG00000022709 I 0.734
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.906
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.922
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.984
RALY Homo sapiens ENSG00000125970 D 0.734
HNRNPC Homo sapiens ENSG00000092199 D 0.906
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.906
RALY Loxodonta africana ENSLAFG00000000321 I 0.750
RALYL Macaca mulatta ENSMMUG00000031878 I 0.750
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.906
RALY Macaca mulatta ENSMMUG00000018093 I 0.734
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.906
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.844
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.906
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.891
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.734
RALYL Microcebus murinus ENSMICG00000005558 I 0.750
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.719
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.891
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.797
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.906
Ralyl Mus musculus ENSMUSG00000039717 I 0.750
Raly Mus musculus ENSMUSG00000027593 I 0.750
RALY Myotis lucifugus ENSMLUG00000005330 I 0.750
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.906
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.750
RALY Ochotona princeps ENSOPRG00000008423 I 0.734
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.891
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.891
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.906
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.906
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.906
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.719
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.891
RALYL Oryzias latipes ENSORLG00000017934 I 0.734
RALYL Oryzias latipes ENSORLG00000012719 I 0.734
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.750
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.828
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.906
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.906
RALY Pan troglodytes ENSPTRG00000013410 I 0.734
RALYL Pan troglodytes ENSPTRG00000020381 I 0.750
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.734
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.750
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.906
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.984
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.844
RALY Procavia capensis ENSPCAG00000016867 I 0.750
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.719
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.750
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.906
Raly Rattus norvegicus ENSRNOG00000017405 I 0.750
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.734
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.906
RALYL Sorex araneus ENSSARG00000002374 I 0.750
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.719
HNRNPC Sorex araneus ENSSARG00000003711 I 0.906
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.719
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.891
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.750
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.750
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.750
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.734
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.734
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.781
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.750
RALY Tarsius syrichta ENSTSYG00000002598 I 0.719
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.906
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.750
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.828
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.734
RALY Tupaia belangeri ENSTBEG00000009812 I 0.734
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.906
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.750
RALY Tursiops truncatus ENSTTRG00000006590 I 0.750
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.906
RALY Vicugna pacos ENSVPAG00000000373 I 0.750
RALYL Vicugna pacos ENSVPAG00000008501 I 0.750
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.906
AAH71084 Xenopus laevis AAH71084 I 0.844
AAH41534 Xenopus laevis AAH41534 I 0.859
AAA60937 Xenopus laevis AAA60937 I 0.844
P19600 Xenopus laevis P19600 I 0.844
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.859
raly Xenopus tropicalis ENSXETG00000019514 I 0.719
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.703