PPIL4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000002706 T42014_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000005264 RRM 244 314

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s502g5t1 Acyrtosiphon pisum DGIL_AUG5s502g5t1 N 0.761
AAEL005690 Aedes aegypti AAEL005690 N 0.817
AAEL005541 Aedes aegypti AAEL005541 N 0.817
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.803
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.915
AMAG_02172 Allomyces macrogynus AMAG_02172 N 0.704
AMAG_00661 Allomyces macrogynus AMAG_00661 N 0.704
AB03196.1 Alternaria brassicicola AB03196.1 N 0.803
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.859
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.930
AGAP008136 Anopheles gambiae AGAP008136 N 0.831
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.803
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.803
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.817
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.803
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.803
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.803
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.803
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.817
An12g00490 Aspergillus niger CADANGAG00009498 N 0.803
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.803
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.789
EDO07903.1 Babesia bovis EDO07903.1 N 0.732
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.775
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.803
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.831
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.915
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.789
BRADI2G41160 Brachypodium distachyon BRADI2G41160 N 0.704
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.845
CBN08292 Caenorhabditis brenneri CBN08292 N 0.775
CBG12494 Caenorhabditis briggsae CBG12494 N 0.775
sig-7 Caenorhabditis elegans F39H2.2 N 0.775
CJA06296 Caenorhabditis japonica CJA06296 N 0.775
CRE29496 Caenorhabditis remanei CRE29496 N 0.775
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.875
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.915
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.845
CAOG_07850 Capsaspora owczarzaki CAOG_07850 N 0.775
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.930
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.831
estExt_fgenesh3_pm.C_240021 Chlorella NC64A estExt_fgenesh3_pm.C_240021 N 0.761
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.789
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.845
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.831
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.803
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.803
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.789
estExt_fgenesh1_kg.C_170006 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_170006 N 0.803
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.761
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.789
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.746
Chro.80276 Cryptosporidium hominis Chro.80276 N 0.704
CMU_026350 Cryptosporidium muris CMU_026350 N 0.704
cgd8_2350 Cryptosporidium parvum cgd8_2350 N 0.704
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.803
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.803
ppil4 Danio rerio ENSDARG00000043854 N 0.915
GF18772 Drosophila ananassae FBgn0095789 N 0.845
GG12319 Drosophila erecta FBgn0104609 N 0.831
GH18460 Drosophila grimshawi FBgn0125927 N 0.845
CG5808 Drosophila melanogaster FBgn0027617 N 0.831
GI24038 Drosophila mojavensis FBgn0146761 N 0.845
GL13859 Drosophila persimilis FBgn0151464 N 0.845
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.845
GM23461 Drosophila sechellia FBgn0178328 N 0.831
GD18267 Drosophila simulans FBgn0189800 N 0.831
GJ23668 Drosophila virilis FBgn0210765 N 0.845
GK13166 Drosophila willistoni FBgn0215175 N 0.803
GE10772 Drosophila yakuba FBgn0228614 N 0.831
PPIL4 Equus caballus ENSECAG00000021819 N 0.915
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.901
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.789
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.803
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.803
PPIL4 Gallus gallus ENSGALG00000012364 N 0.944
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.915
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.915
83285 Helobdella robusta 83285 N 0.817
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.761
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.803
PPIL4 Homo sapiens ENSG00000131013 N 0.915
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.775
LOAG_08216 Loa loa LOAG_08216 N 0.817
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.803
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.915
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.915
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.803
estExt_fgenesh1_kg.C_40083 Melampsora laricis populina estExt_fgenesh1_kg.C_40083 N 0.761
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.944
Minc10084 Meloidogyne incognita Minc10084 N 0.775
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.915
PierreAnnot2.00074 Micromonas pusilla PierreAnnot2.00074 N 0.732
MCYG_06073 Microsporum canis MCYG_06073 N 0.817
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.817
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.930
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.803
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.775
Ppil4 Mus musculus ENSMUSG00000015757 N 0.915
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.817
fgenesh1_pm.C_scaffold_9000117 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_9000117 N 0.789
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.803
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.915
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.789
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.789
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.887
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.803
NCLIV_045550 Neospora caninum NCLIV_045550 N 0.704
NCU10166 Neurospora crassa NCU10166 N 0.831
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.831
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.831
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.915
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.789
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.958
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.915
BGIOSIBCE022975 Oryza indica BGIOSIBCE022975 N 0.704
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.958
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.789
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.775
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.775
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.915
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.915
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.803
GSPATP00006636001 Paramecium tetraurelia GSPATP00006636001 N 0.704
PHUM268300 Pediculus humanus PHUM268300 N 0.803
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.803
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.817
EAT81165.2 Phaeosphaeria nodorum EAT81165.2 N 0.817
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.761
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.803
PF08_0086 Plasmodium falciparum PF08_0086 N 0.732
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.789
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.761
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.761
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.831
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.789
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.915
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.915
PGTG_14680 Puccinia graminis PGTG_14680 N 0.746
PGTG_10482 Puccinia graminis PGTG_10482 N 0.761
PTTG_06854 Puccinia triticina PTTG_06854 N 0.746
PTRG_04608 Pyrenophora tritici repentis PTRG_04608 N 0.817
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.915
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.775
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.775
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.817
Smp_165540 Schistosoma mansoni Smp_165540 N 0.817
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.775
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.746
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.746
SOCG_02586 Schizosaccharomyces octosporus SOCG_02586 N 0.746
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.775
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.746
fgenesh2_pm.4_#_1016 Serpula lacrymans fgenesh2_pm.4_#_1016 N 0.761
PPIL4 Sorex araneus ENSSARG00000011244 N 0.915
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.887
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.817
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.761
SNOG_11457 Stagonospora nodorum SNOG_11457 N 0.817
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.817
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.817
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.817
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.817
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.930
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.986
3821.m00489 Tetrahymena thermophila 3821.m00489 N 0.704
AMSG_10031 Thecamonas trahens AMSG_10031 N 0.746
TP03_0334 Theileria parva TP03_0334 N 0.704
estExt_Genewise1.C_23809 Thielavia terrestris estExt_Genewise1.C_23809 N 0.775
TGVEG_068650 Toxoplasma gondii TGVEG_068650 N 0.718
TGME49_027850 Toxoplasma gondii TGME49_027850 N 0.718
TGGT1_083150 Toxoplasma gondii TGGT1_083150 N 0.718
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.761
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.775
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.775
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.775
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.817
TERG_06028 Trichophyton rubrum TERG_06028 N 0.817
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.817
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.859
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.775
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.915
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.803
UM03490 Ustilago maydis UM03490 N 0.775
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.775
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.775
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.915
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.845
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.944