CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ14351
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0201564
T44054_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0228768
RRM
1122
1186
LLLKNLNAQIDGSTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLGNTTIF
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s11561g1t1
Acyrtosiphon pisum
DGIL_AUG5s11561g1t1
N
0.800
AAEL007436
Aedes aegypti
AAEL007436
N
0.815
AAEL801228
Aedes aegypti
AAEL007447
N
0.815
AGAP007802
Anopheles gambiae
AGAP007802
N
0.877
AGAP007808
Anopheles gambiae
AGAP007808
N
0.785
amel4_ncbi_hmm5263
Apis mellifera
amel4_ncbi_hmm5263
N
0.769
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.815
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.831
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.723
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.831
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.723
PASA_GEN_0100279
Daphnia pulex
PASA_GEN_0100279
N
0.723
GF19039
Drosophila ananassae
FBgn0096051
N
0.923
GG16439
Drosophila erecta
FBgn0108670
N
0.938
GH23931
Drosophila grimshawi
FBgn0131388
N
0.969
gw
Drosophila melanogaster
FBgn0051992
N
0.954
GL18179
Drosophila persimilis
FBgn0155782
N
0.938
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
0.938
GM26772
Drosophila sechellia
FBgn0181625
N
0.954
GD24374
Drosophila simulans
FBgn0195715
N
0.954
GK13697
Drosophila willistoni
FBgn0215705
N
0.908
GE14506
Drosophila yakuba
FBgn0232110
N
0.938