cassava43399.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava43399.valid.m1 T49409_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43399.valid.m1 RRM 42 112

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002887486.1 Arabidopsis lyrata fgenesh2_kg.2__1690__AT1G74230.1 N 0.775
XM_002864670.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002097 N 0.789
GR-RBP5 Arabidopsis thaliana AT1G74230-TAIR-G N 0.775
GR-RBP3 Arabidopsis thaliana AT5G61030-TAIR-G N 0.775
BRADI3G24720 Brachypodium distachyon BRADI3G24720 N 0.718
PK15111.1 Cannabis sativa PK15111.1 N 0.845
Cucsa.198260 Cucumis sativus Cucsa.198260 N 0.873
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.775
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.732
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.859
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.718
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.859
LjT12A09.50.nd Lotus japonicus LjT12A09.50.nd N 0.761
chr4.CM0500.260.nd Lotus japonicus chr4.CM0500.260.nd N 0.718
chr1.CM0410.300.nd Lotus japonicus chr1.CM0410.300.nd N 0.789
MDP0000635271 Malus x domestica MDP0000635271 N 0.859
MDP0000255642 Malus x domestica MDP0000255642 N 0.817
MDP0000302917 Malus x domestica MDP0000302917 N 0.817
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 0.930
cassava29352.valid.m1 Manihot esculenta cassava29352.valid.m1 N 0.930
Medtr3g036670 Medicago truncatula Medtr3g036670 N 0.761
mgf014059m Mimulus guttatus mgf014059m N 0.845
mgf012875m Mimulus guttatus mgf012875m N 0.845
mgf007732m Mimulus guttatus mgf007732m N 0.817
mgf016144m Mimulus guttatus mgf016144m N 0.845
BGIOSIBCE036678 Oryza indica BGIOSIBCE036678 N 0.718
LOC_Os10g17454 Oryza sativa LOC_Os10g17454 N 0.704
LOC_Os12g31800 Oryza sativa LOC_Os12g31800 N 0.718
PDK_20s1328241g004 Phoenix dactylifera PDK_20s1328241g004 N 0.789
PDK_20s1742611g001 Phoenix dactylifera PDK_20s1742611g001 N 0.718
B9I2R7_POPTR Populus trichocarpa POPTR_0012s05870 N 0.887
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.817
ppa010113m Prunus persica ppa010113m N 0.831
30138.m003973 Ricinus communis 30138.m003973 N 0.887
SB08G015580 Sorghum bicolor Sb08g015580 N 0.775
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.887
GRMZM2G150521 Zea mays GRMZM2G150521 N 0.761
GRMZM2G009448 Zea mays GRMZM2G009448 N 0.732