XM_002873169.1 (Arabidopsis lyrata)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgenesh1_pg.C_scaffold_6000426 T60673_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_6000426 S1 18 92

Links

Other S1 family RBPs
Other Arabidopsis lyrata RBPs

190 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.000
AAEL013675 Aedes aegypti AAEL013675 I 0.000
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.000
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.720
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.720
AB05699.1 Alternaria brassicicola AB05699.1 I 0.000
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.720
AGAP011190 Anopheles gambiae AGAP011190 I 0.000
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.711
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.921
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.921
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.960
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.720
AGR320W Ashbya gossypii AGR320W I 0.000
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.711
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.711
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.711
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.000
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.711
AO090012000783 Aspergillus oryzae CADAORAG00006316 N 0.000
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.711
72304 Aureococcus anophagefferens 72304 I 0.733
69770 Aureococcus anophagefferens 69770 I 0.733
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.737
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.711
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.711
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.720
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.711
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.867
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.893
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.733
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.733
Bm1_04900 Brugia malayi Bm1_04900 I 0.720
CBN09310 Caenorhabditis brenneri CBN09310 I 0.707
CBN03344 Caenorhabditis brenneri CBN03344 I 0.707
CBG22041 Caenorhabditis briggsae CBG22041 I 0.720
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.707
CRE03750 Caenorhabditis remanei CRE03750 I 0.707
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.720
SUI2 Candida albicans orf19.6213 I 0.000
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.000
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.000
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.000
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.000
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.000
CTRG_04191 Candida tropicalis CTRG_04191 I 0.000
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.720
PK10564.1 Cannabis sativa PK10564.1 I 0.921
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.707
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.701
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.720
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.724
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.816
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.787
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.829
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.000
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.000
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.707
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.711
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.711
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.829
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.000
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.711
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.711
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.737
Chro.70587 Cryptosporidium hominis Chro.70587 I 0.000
CMU_019420 Cryptosporidium muris CMU_019420 N 0.000
cgd7_5270 Cryptosporidium parvum cgd7_5270 I 0.000
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.921
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.000
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.000
eif2s1 Danio rerio ENSDARG00000052178 I 0.720
eif2s1l Danio rerio ENSDARG00000005827 I 0.720
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.724
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.000
GID1.0050760 Dictyostelium purpureum GID1.0050760 I 0.000
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.720
GF19374 Drosophila ananassae FBgn0096384 I 0.000
GG19321 Drosophila erecta FBgn0111525 I 0.000
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.000
GI21763 Drosophila mojavensis FBgn0144493 I 0.000
GL20268 Drosophila persimilis FBgn0157863 I 0.000
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.000
GM13399 Drosophila sechellia FBgn0168330 I 0.000
GD15749 Drosophila simulans FBgn0187410 I 0.000
GJ19141 Drosophila virilis FBgn0206286 I 0.000
GK25248 Drosophila willistoni FBgn0227207 I 0.000
GE15968 Drosophila yakuba FBgn0233524 I 0.000
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.720
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.707
LOC100052709 Equus caballus ENSECAG00000018424 I 0.720
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.720
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.737
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.724
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.711
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.711
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.720
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.720
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.921
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.921
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.720
114622 Helobdella robusta 114622 I 0.720
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.724
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.720
EIF2S1 Homo sapiens ENSG00000134001 I 0.720
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.720
ISCW017360 Ixodes scapularis ISCW017360 I 0.711
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.707
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.711
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.711
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.711
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.000
LOAG_09556 Loa loa LOAG_09556 I 0.720
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.000
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.707
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.921
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.720
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.720
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.724
EDP42051.1 Malassezia globosa EDP42051.1 I 0.724
MDP0000663428 Malus x domestica MDP0000663428 I 0.921
MDP0000155133 Malus x domestica MDP0000155133 I 0.947
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.908
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.908
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.893
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.921
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.882
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.921
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.733
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.720
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.720
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.787
MCYG_00123 Microsporum canis MCYG_00123 I 0.720
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.720
mgf006782m Mimulus guttatus mgf006782m I 0.882
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.720
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.000
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.733
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.720
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.724
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.711
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.711
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.000
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.711
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.711
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.724
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.724
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.711
NCU08277 Neurospora crassa NCU08277 I 0.724
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.724
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.724
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.720
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.720
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.720
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.787
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.880
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.787
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.880
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.720
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.773
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.800
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.720
PHUM551010 Pediculus humanus PHUM551010 I 0.711
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.711
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.724
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.000
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.737
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.747
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.842
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.829
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.707
PITG_07885 Phytophthora infestans PITG_07885 I 0.747
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.747
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.000
PBANKA_021210 Plasmodium berghei PBANKA_021210 N 0.000
PCHAS_021050 Plasmodium chabaudi PCHAS_021050 N 0.000
PF07_0117 Plasmodium falciparum PF07_0117 N 0.000
PKH_021240 Plasmodium knowlesi PKH_021240 N 0.000
PVX_081705 Plasmodium vivax PVX_081705 N 0.000
PY00093 Plasmodium yoelii PY00093 N 0.000
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.737
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.737
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.724
EFA85538.1 Polysphondylium pallidum EFA85538.1 I 0.000
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.720
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.921
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.921
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.737
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.720
ppa008120m Prunus persica ppa008120m I 0.921
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.000
PGTG_13830 Puccinia graminis PGTG_13830 N 0.000
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.000
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.720
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.733
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.733
29607.m000238 Ricinus communis 29607.m000238 I 0.921
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.000
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.000
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.000
SUI2 Saccharomyces cerevisiae YJR007W I 0.000
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.000
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.000
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.000
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.711
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.000
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.000
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.000
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.000
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.000
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.840
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.750
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.720
SB01G038230 Sorghum bicolor Sb01g038230 I 0.880
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.720
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.747
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.733
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.000
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.000
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.000
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.000
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.000
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.720
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.720
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.720
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.000
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.720
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.711
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.720
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.724
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.711
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.711
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.711
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.711
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.720
TERG_00559 Trichophyton rubrum TERG_00559 I 0.720
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.720
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.720
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.000
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.711
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.733
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.711
UM01463 Ustilago maydis UM01463 I 0.737
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.000
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.711
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.711
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.908
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.816
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.720
AAH46576 Xenopus laevis AAH46576 I 0.720
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.720
eif2s1 Xenopus tropicalis ENSXETG00000011221 I 0.000
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.737
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.880
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.880
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.000