MDP0000214403 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000214403 T01098_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000214403 CCCH ZF 240 264
MDP0000214403 RRM 443 490

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.802
ppa002383m Prunus persica ppa002383m N 0.802
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.793
MDP0000164538 Malus x domestica MDP0000164538 N 0.791
PK18074.1 Cannabis sativa PK18074.1 N 0.791
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.782
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.782
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.756
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.744
30169.m006472 Ricinus communis 30169.m006472 N 0.733
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.733
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.713
30169.m006471 Ricinus communis 30169.m006471 N 0.709
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.701