30169.m006472 (Ricinus communis)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		30169.m006472 T00821_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30169.m006472 CCCH ZF 239 262
30169.m006472 RRM 380 440

Links

Other CCCH ZF,RRM family RBPs
Other Ricinus communis RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.906
PK18074.1 Cannabis sativa PK18074.1 N 0.859
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.851
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.851
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.851
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.849
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.849
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.849
ppa002383m Prunus persica ppa002383m N 0.847
MDP0000164538 Malus x domestica MDP0000164538 N 0.847
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.835
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.826
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.824
mgf002273m Mimulus guttatus mgf002273m N 0.802
30169.m006471 Ricinus communis 30169.m006471 N 0.800
mgf000973m Mimulus guttatus mgf000973m N 0.800
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.788
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.788
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.782
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.779
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.779
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.779
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.776
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.776
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.776
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.776
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.776
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.776
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.776
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.776
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.776
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.776
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.776
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.776
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.776
SB01G036490 Sorghum bicolor Sb01g036490 N 0.776
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.776
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.776
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.776
MDP0000120231 Malus x domestica MDP0000120231 N 0.776
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.776
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.770
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.770
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.767
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.767
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.767
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.765
MDP0000120462 Malus x domestica MDP0000120462 N 0.765
ppa002413m Prunus persica ppa002413m N 0.765
SB02G043180 Sorghum bicolor Sb02g043180 N 0.765
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.765
ppa023263m Prunus persica ppa023263m N 0.765
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.765
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.756
mgf014647m Mimulus guttatus mgf014647m N 0.756
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.756
SB08G001980 Sorghum bicolor Sb08g001980 N 0.756
MDP0000243086 Malus x domestica MDP0000243086 N 0.753
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.753
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.744
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.744
SB05G001540 Sorghum bicolor Sb05g001540 N 0.733
MDP0000214403 Malus x domestica MDP0000214403 N 0.733
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.729
MDP0000220601 Malus x domestica MDP0000220601 N 0.721
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.721