MDP0000164538 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000164538 T01095_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000164538 CCCH ZF 244 267
MDP0000164538 RRM 382 442

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.942
PK18074.1 Cannabis sativa PK18074.1 N 0.941
ppa002383m Prunus persica ppa002383m N 0.941
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.931
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.897
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.897
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.872
30169.m006472 Ricinus communis 30169.m006472 N 0.847
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.835
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.835
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.816
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.814
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.814
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.814
30169.m006471 Ricinus communis 30169.m006471 N 0.812
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.802
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.802
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.802
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.800
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.800
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.791
MDP0000214403 Malus x domestica MDP0000214403 N 0.791
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.791
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.791
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.788
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.788
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.788
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.788
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.788
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.788
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.788
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.788
MDP0000243086 Malus x domestica MDP0000243086 N 0.788
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.788
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.788
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.788
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.788
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.788
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.788
SB02G043180 Sorghum bicolor Sb02g043180 N 0.788
SB01G036490 Sorghum bicolor Sb01g036490 N 0.788
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.788
MDP0000120462 Malus x domestica MDP0000120462 N 0.788
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.788
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.788
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.782
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.782
mgf002273m Mimulus guttatus mgf002273m N 0.779
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.776
ppa023263m Prunus persica ppa023263m N 0.776
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.776
ppa002413m Prunus persica ppa002413m N 0.776
MDP0000120231 Malus x domestica MDP0000120231 N 0.776
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.776
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.767
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.767
mgf000973m Mimulus guttatus mgf000973m N 0.765
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.765
MDP0000220601 Malus x domestica MDP0000220601 N 0.756
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.744
SB08G001980 Sorghum bicolor Sb08g001980 N 0.744
MDP0000256775 Malus x domestica MDP0000256775 N 0.733
mgf014647m Mimulus guttatus mgf014647m N 0.733
MDP0000259773 Malus x domestica MDP0000259773 N 0.733
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.733
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.729
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.729
SB05G001540 Sorghum bicolor Sb05g001540 N 0.721