chr2.CM0018.150.nc (Lotus japonicus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		chr2.CM0018.150.nc T01052_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0018.150.nc CCCH ZF 221 245
chr2.CM0018.150.nc RRM 360 420

Links

Other CCCH ZF,RRM family RBPs
Other Lotus japonicus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.943
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.943
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.943
ppa002383m Prunus persica ppa002383m N 0.942
MDP0000164538 Malus x domestica MDP0000164538 N 0.942
PK18074.1 Cannabis sativa PK18074.1 N 0.930
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.895
30169.m006472 Ricinus communis 30169.m006472 N 0.849
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.837
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.826
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.805
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.805
30169.m006471 Ricinus communis 30169.m006471 N 0.802
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.802
MDP0000214403 Malus x domestica MDP0000214403 N 0.802
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.802
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.791
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.791
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.791
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.791
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.791
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.791
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.791
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.791
mgf002273m Mimulus guttatus mgf002273m N 0.791
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.791
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.782
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.782
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.779
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.779
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.779
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.779
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.779
mgf000973m Mimulus guttatus mgf000973m N 0.779
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.779
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.779
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.779
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.779
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.779
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.779
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.779
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.779
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.779
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.779
MDP0000120462 Malus x domestica MDP0000120462 N 0.779
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.779
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.779
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.779
SB01G036490 Sorghum bicolor Sb01g036490 N 0.779
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.779
SB02G043180 Sorghum bicolor Sb02g043180 N 0.779
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.767
MDP0000120231 Malus x domestica MDP0000120231 N 0.767
MDP0000243086 Malus x domestica MDP0000243086 N 0.767
ppa023263m Prunus persica ppa023263m N 0.767
ppa002413m Prunus persica ppa002413m N 0.767
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.767
mgf014647m Mimulus guttatus mgf014647m N 0.756
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.756
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.756
MDP0000220601 Malus x domestica MDP0000220601 N 0.756
SB08G001980 Sorghum bicolor Sb08g001980 N 0.756
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.744
MDP0000256775 Malus x domestica MDP0000256775 N 0.733
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.733
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.733
SB05G001540 Sorghum bicolor Sb05g001540 N 0.733
MDP0000259773 Malus x domestica MDP0000259773 N 0.733
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.721
ppa003564m Prunus persica ppa003564m N 0.709
PK20504.1 Cannabis sativa PK20504.1 N 0.709
MDP0000214614 Malus x domestica MDP0000214614 N 0.709