XM_002313318.1 (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0009s05510 T00754_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05510.1 CCCH ZF 237 261
POPTR_0009s05510.1 RRM 372 432

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.908
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.872
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.862
30169.m006472 Ricinus communis 30169.m006472 N 0.849
PK18074.1 Cannabis sativa PK18074.1 N 0.837
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.828
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.828
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.828
ppa002383m Prunus persica ppa002383m N 0.826
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.814
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.805
MDP0000164538 Malus x domestica MDP0000164538 N 0.802
30169.m006471 Ricinus communis 30169.m006471 N 0.802
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.793
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.791
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.782
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.782
mgf002273m Mimulus guttatus mgf002273m N 0.782
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.779
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.779
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.779
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.779
SB01G036490 Sorghum bicolor Sb01g036490 N 0.779
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.779
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.770
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.770
mgf000973m Mimulus guttatus mgf000973m N 0.767
ppa023263m Prunus persica ppa023263m N 0.767
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.767
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.767
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.767
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.767
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.759
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.759
SB02G043180 Sorghum bicolor Sb02g043180 N 0.756
ppa002413m Prunus persica ppa002413m N 0.756
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.756
MDP0000243086 Malus x domestica MDP0000243086 N 0.756
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.756
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.756
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.756
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.756
MDP0000120231 Malus x domestica MDP0000120231 N 0.756
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.756
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.756
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.756
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.747
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.744
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.744
MDP0000120462 Malus x domestica MDP0000120462 N 0.744
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.744
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.744
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.744
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.744
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.736
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.736
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.733
MDP0000220601 Malus x domestica MDP0000220601 N 0.724
mgf014647m Mimulus guttatus mgf014647m N 0.724
MDP0000214403 Malus x domestica MDP0000214403 N 0.713
SB08G001980 Sorghum bicolor Sb08g001980 N 0.713
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.713
MDP0000259773 Malus x domestica MDP0000259773 N 0.701
MDP0000256775 Malus x domestica MDP0000256775 N 0.701
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.701
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.701