PK18074.1 (Cannabis sativa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		PK18074.1 T00353_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK18074.1 CCCH ZF 248 271
PK18074.1 RRM 390 450

Links

Other CCCH ZF,RRM family RBPs
Other Cannabis sativa RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002383m Prunus persica ppa002383m N 0.953
MDP0000164538 Malus x domestica MDP0000164538 N 0.941
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.931
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.930
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.897
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.897
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.884
30169.m006472 Ricinus communis 30169.m006472 N 0.859
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.847
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.837
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.824
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.812
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.793
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.791
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.791
MDP0000214403 Malus x domestica MDP0000214403 N 0.791
30169.m006471 Ricinus communis 30169.m006471 N 0.788
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.779
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.779
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.779
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.779
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.776
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.776
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.776
MDP0000120462 Malus x domestica MDP0000120462 N 0.776
mgf000973m Mimulus guttatus mgf000973m N 0.776
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.776
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.767
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.767
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.767
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.765
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.765
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.765
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.765
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.765
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.765
MDP0000120231 Malus x domestica MDP0000120231 N 0.765
MDP0000243086 Malus x domestica MDP0000243086 N 0.765
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.765
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.765
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.765
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.765
SB01G036490 Sorghum bicolor Sb01g036490 N 0.765
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.765
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.765
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.765
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.765
SB02G043180 Sorghum bicolor Sb02g043180 N 0.765
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.765
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.765
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.765
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.765
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.759
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.759
mgf002273m Mimulus guttatus mgf002273m N 0.756
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.753
ppa002413m Prunus persica ppa002413m N 0.753
ppa023263m Prunus persica ppa023263m N 0.753
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.753
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.744
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.744
SB08G001980 Sorghum bicolor Sb08g001980 N 0.744
mgf014647m Mimulus guttatus mgf014647m N 0.733
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.733
MDP0000220601 Malus x domestica MDP0000220601 N 0.721
SB05G001540 Sorghum bicolor Sb05g001540 N 0.721
MDP0000214614 Malus x domestica MDP0000214614 N 0.709
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.709
ppa003564m Prunus persica ppa003564m N 0.709