Glyma11g01780.1 (Glycine max)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Glyma11g01780.1 T00959_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma11g01780.1 CCCH ZF 225 250
Glyma11g01780.1 RRM 356 416

Links

Other CCCH ZF,RRM family RBPs
Other Glycine max RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 1.000
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.943
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.920
ppa002383m Prunus persica ppa002383m N 0.908
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.908
MDP0000164538 Malus x domestica MDP0000164538 N 0.897
PK18074.1 Cannabis sativa PK18074.1 N 0.897
30169.m006472 Ricinus communis 30169.m006472 N 0.851
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.839
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.839
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.828
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.828
30169.m006471 Ricinus communis 30169.m006471 N 0.828
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.828
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.828
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.816
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.805
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.805
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.805
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.805
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.805
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.805
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.805
ppa023263m Prunus persica ppa023263m N 0.793
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.793
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.793
MDP0000214403 Malus x domestica MDP0000214403 N 0.782
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.782
mgf000973m Mimulus guttatus mgf000973m N 0.782
MDP0000120462 Malus x domestica MDP0000120462 N 0.782
MDP0000243086 Malus x domestica MDP0000243086 N 0.782
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.770
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.770
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.770
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.770
SB01G036490 Sorghum bicolor Sb01g036490 N 0.770
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.770
mgf002273m Mimulus guttatus mgf002273m N 0.770
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.770
MDP0000120231 Malus x domestica MDP0000120231 N 0.770
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.770
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.770
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.770
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.770
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.770
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.770
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.759
SB02G043180 Sorghum bicolor Sb02g043180 N 0.759
SB08G001980 Sorghum bicolor Sb08g001980 N 0.759
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.759
MDP0000220601 Malus x domestica MDP0000220601 N 0.759
ppa002413m Prunus persica ppa002413m N 0.759
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.759
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.759
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.759
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.747
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.747
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.747
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.747
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.747
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.747
mgf014647m Mimulus guttatus mgf014647m N 0.736
MDP0000256775 Malus x domestica MDP0000256775 N 0.736
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.736
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.736
SB05G001540 Sorghum bicolor Sb05g001540 N 0.736
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.736
MDP0000259773 Malus x domestica MDP0000259773 N 0.736
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.724
MDP0000214614 Malus x domestica MDP0000214614 N 0.701
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.701
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.701
PK20504.1 Cannabis sativa PK20504.1 N 0.701
ppa003564m Prunus persica ppa003564m N 0.701