cassava2159.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava2159.valid.m1 T00834_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava2159.valid.m1 CCCH ZF 234 257
cassava2159.valid.m1 RRM 369 429

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006472 Ricinus communis 30169.m006472 N 0.906
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.872
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.859
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.849
PK18074.1 Cannabis sativa PK18074.1 N 0.847
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.839
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.837
mgf002273m Mimulus guttatus mgf002273m N 0.837
ppa002383m Prunus persica ppa002383m N 0.835
MDP0000164538 Malus x domestica MDP0000164538 N 0.835
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.828
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.828
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.826
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.824
30169.m006471 Ricinus communis 30169.m006471 N 0.812
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.805
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.805
mgf000973m Mimulus guttatus mgf000973m N 0.800
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.800
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.793
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.791
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.791
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.788
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.788
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.788
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.788
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.788
SB01G036490 Sorghum bicolor Sb01g036490 N 0.788
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.788
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.788
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.788
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.788
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.788
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.779
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.779
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.779
SB08G001980 Sorghum bicolor Sb08g001980 N 0.779
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.776
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.776
ppa023263m Prunus persica ppa023263m N 0.776
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.776
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.767
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.767
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.767
SB02G043180 Sorghum bicolor Sb02g043180 N 0.765
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.765
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.765
MDP0000243086 Malus x domestica MDP0000243086 N 0.765
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.765
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.765
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.765
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.765
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.765
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.765
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.756
SB05G001540 Sorghum bicolor Sb05g001540 N 0.756
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.756
MDP0000120231 Malus x domestica MDP0000120231 N 0.753
ppa002413m Prunus persica ppa002413m N 0.753
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.753
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.753
MDP0000120462 Malus x domestica MDP0000120462 N 0.741
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.733
MDP0000214403 Malus x domestica MDP0000214403 N 0.733
mgf014647m Mimulus guttatus mgf014647m N 0.733
MDP0000220601 Malus x domestica MDP0000220601 N 0.733
MDP0000256775 Malus x domestica MDP0000256775 N 0.709
MDP0000259773 Malus x domestica MDP0000259773 N 0.709