mgf002273m (Mimulus guttatus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		mgf002273m T00990_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf002273m CCCH ZF 217 240
mgf002273m RRM 330 390

Links

Other CCCH ZF,RRM family RBPs
Other Mimulus guttatus RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf000973m Mimulus guttatus mgf000973m N 0.859
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.859
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.847
30169.m006471 Ricinus communis 30169.m006471 N 0.847
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.847
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.839
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.837
ppa002413m Prunus persica ppa002413m N 0.835
MDP0000120231 Malus x domestica MDP0000120231 N 0.824
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.824
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.824
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.824
SB08G001980 Sorghum bicolor Sb08g001980 N 0.824
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.824
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.816
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.816
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.814
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.814
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.812
ppa023263m Prunus persica ppa023263m N 0.812
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.812
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.812
MDP0000120462 Malus x domestica MDP0000120462 N 0.812
30169.m006472 Ricinus communis 30169.m006472 N 0.802
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.800
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.800
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.800
MDP0000243086 Malus x domestica MDP0000243086 N 0.800
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.800
SB05G001540 Sorghum bicolor Sb05g001540 N 0.800
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.800
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.800
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.800
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.791
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.788
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.788
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.788
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.788
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.788
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.788
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.782
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.782
MDP0000164538 Malus x domestica MDP0000164538 N 0.779
SB01G036490 Sorghum bicolor Sb01g036490 N 0.776
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.776
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.776
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.776
MDP0000220601 Malus x domestica MDP0000220601 N 0.776
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.776
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.776
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.765
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.765
SB02G043180 Sorghum bicolor Sb02g043180 N 0.765
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.765
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.765
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.765
mgf014647m Mimulus guttatus mgf014647m N 0.765
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.765
ppa002383m Prunus persica ppa002383m N 0.756
PK18074.1 Cannabis sativa PK18074.1 N 0.756
MDP0000256775 Malus x domestica MDP0000256775 N 0.753
MDP0000259773 Malus x domestica MDP0000259773 N 0.753
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.753
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.741
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.718
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.718
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.701
ppa019338m Prunus persica ppa019338m N 0.701