SB03G009920 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb03g009920 T04106_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g009920.1 CCCH ZF 42 68
Sb03g009920.1 CCCH ZF 90 116
Sb03g009920.1 CCCH ZF 134 160
Sb03g009920.1 CCCH ZF 288 314
Sb03g009920.1 CCCH ZF 334 360

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.978
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.970
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.867
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.837
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.785
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.785
SB03G009930 Sorghum bicolor Sb03g009930 N 0.778
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.778
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.770
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.726
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.719
29726.m004014 Ricinus communis 29726.m004014 N 0.711
ppa005056m Prunus persica ppa005056m N 0.704
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.704
mgf002685m Mimulus guttatus mgf002685m N 0.704
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.704