cassava29658.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava29658.valid.m1 T04782_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29658.valid.m1 CCCH ZF 2 26
cassava29658.valid.m1 CCCH ZF 32 55
cassava29658.valid.m1 CCCH ZF 140 165
cassava29658.valid.m1 CCCH ZF 300 323

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.909
30061.m000291 Ricinus communis 30061.m000291 N 0.889
MDP0000170583 Malus x domestica MDP0000170583 N 0.869
ppa006435m Prunus persica ppa006435m N 0.859
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.850
MDP0000173577 Malus x domestica MDP0000173577 N 0.828
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.812
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.804
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.775
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.775
PK11636.1 Cannabis sativa PK11636.1 N 0.765
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.752
mgf018432m Mimulus guttatus mgf018432m N 0.735
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.713
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.706
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.703