gw1.102.25.1 (Physcomitrella patens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.102.25.1 T05502_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.102.25.1 CCCH ZF 25 51
gw1.102.25.1 CCCH ZF 71 96
gw1.102.25.1 CCCH ZF 116 142
gw1.102.25.1 CCCH ZF 260 286
gw1.102.25.1 CCCH ZF 306 332

Links

Other CCCH ZF family RBPs
Other Physcomitrella patens RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.815
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.813
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.813
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.813
30128.m009030 Ricinus communis 30128.m009030 N 0.806
ppa005813m Prunus persica ppa005813m N 0.806
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.806
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.806
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.806
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.806
SB05G013190 Sorghum bicolor Sb05g013190 N 0.791
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.791
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.785
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.785
PK23881.1 Cannabis sativa PK23881.1 N 0.784
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.784
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.784
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.784
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.784
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.776
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.776
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.776
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.776
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.770
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.769
29620.m000559 Ricinus communis 29620.m000559 N 0.769
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.769
mgf007299m Mimulus guttatus mgf007299m N 0.763
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.761
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.761
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.761
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.761
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.761
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.754
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.746
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.739
ppa005229m Prunus persica ppa005229m N 0.739
29726.m004014 Ricinus communis 29726.m004014 N 0.739
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.739
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.739
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.739
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.739
PK29685.1 Cannabis sativa PK29685.1 N 0.739
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.731
ppa005056m Prunus persica ppa005056m N 0.731
MDP0000178517 Malus x domestica MDP0000178517 N 0.731
MDP0000207283 Malus x domestica MDP0000207283 N 0.724
29647.m002009 Ricinus communis 29647.m002009 N 0.724
ppa005469m Prunus persica ppa005469m N 0.724
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.724
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.724
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.719
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.719
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.716
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.716
MDP0000319251 Malus x domestica MDP0000319251 N 0.716
chr2.LjT24P12.40.nd Lotus japonicus chr2.LjT24P12.40.nd N 0.716
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.716
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.716
MDP0000285251 Malus x domestica MDP0000285251 N 0.716
mgf008934m Mimulus guttatus mgf008934m N 0.711
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.711
mgf002685m Mimulus guttatus mgf002685m N 0.709
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.709
MDP0000535412 Malus x domestica MDP0000535412 N 0.709
MDP0000804620 Malus x domestica MDP0000804620 N 0.709
MDP0000243257 Malus x domestica MDP0000243257 N 0.709
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.704
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.704
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.704
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.704
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.704
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.701
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.701