mgf001793m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf001793m T05607_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf001793m CCCH ZF 37 63
mgf001793m CCCH ZF 79 104
mgf001793m CCCH ZF 124 150
mgf001793m CCCH ZF 281 307
mgf001793m CCCH ZF 326 352

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf004851m Mimulus guttatus mgf004851m N 1.000
mgf010716m Mimulus guttatus mgf010716m N 1.000
ppa005229m Prunus persica ppa005229m N 0.791
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.776
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.761
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.761
MDP0000207283 Malus x domestica MDP0000207283 N 0.754
29647.m002009 Ricinus communis 29647.m002009 N 0.739
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.739
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.733
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.733
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.733
ppa005056m Prunus persica ppa005056m N 0.731
MDP0000319251 Malus x domestica MDP0000319251 N 0.731
MDP0000535412 Malus x domestica MDP0000535412 N 0.731
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.709
29726.m004014 Ricinus communis 29726.m004014 N 0.709
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.704
PK29685.1 Cannabis sativa PK29685.1 N 0.701