YBX2 (Oryctolagus cuniculus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSOCUG00000015064 T16940_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.726
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.726
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.716
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.716
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.716
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000012948 CSD 58 118

Links

Other CSD family RBPs
Other Oryctolagus cuniculus RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.839
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.836
YBX2 Microcebus murinus ENSMICG00000012453 I 0.836
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.836
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.820
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.820
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.806
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.806
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.803
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.803
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.803
YBX1 Procavia capensis ENSPCAG00000008397 I 0.803
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.803
CSDA Felis catus ENSFCAG00000018959 I 0.803
YB-1 Homo sapiens ENSG00000065978 D 0.803
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.803
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.787
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.779
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.773
LOC100072964 Equus caballus ENSECAG00000009996 I 0.743
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.743
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.743
YBX2 Canis familiaris ENSCAFG00000016128 I 0.743
YBX2 Procavia capensis ENSPCAG00000008019 I 0.743
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.743
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.743
Ybx2 Mus musculus ENSMUSG00000018554 I 0.743
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.743
YBX2 Sus scrofa ENSSSCG00000017938 I 0.743
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.743
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.743
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.742
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.738
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.732
AAI55915 Xenopus laevis AAI55915 I 0.730
YBX2 Sorex araneus ENSSARG00000000488 I 0.730
AAI69704 Xenopus laevis AAI69704 I 0.730
P21574 Xenopus laevis P21574 I 0.730
YBX2 Homo sapiens ENSG00000006047 D 0.730
ybx2-a Xenopus laevis AAI69706 D 0.730
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.730
AAA49716 Xenopus laevis AAA49716 I 0.730
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.730
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.716
ybx1 Danio rerio ENSDARG00000004757 I 0.716
Csda Dipodomys ordii ENSDORG00000009103 I 0.716
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.716
CSDA Cavia porcellus ENSCPOG00000011329 I 0.716
LOC100065107 Equus caballus ENSECAG00000013777 I 0.716
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.716
LOC100067336 Equus caballus ENSECAG00000023592 I 0.716
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.716
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.716
CSDA Loxodonta africana ENSLAFG00000017247 I 0.716
YBX1 Microcebus murinus ENSMICG00000014984 I 0.716
CSDA Macaca mulatta ENSMMUG00000022469 I 0.716
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.716
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.716
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.716
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.716
CSDA Homo sapiens ENSG00000060138 I 0.716
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.716
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.716
Csda Mus musculus ENSMUSG00000030189 I 0.716
Ybx1 Mus musculus ENSMUSG00000028639 I 0.716
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.716
CSDA Echinops telfairi ENSETEG00000002557 I 0.716
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.716
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.716
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.716
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.716
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.716
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.716
AAA49715 Xenopus laevis AAA49715 I 0.716
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.716
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.716
CSDA Sus scrofa ENSSSCG00000000633 I 0.716
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.716
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.716
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.716
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.716
CSDA Pan troglodytes ENSPTRG00000004681 I 0.716
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.716
Csda Rattus norvegicus ENSRNOG00000005480 I 0.716
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.716
AAA49924 Xenopus laevis AAA49924 I 0.716
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.716
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.716
AAH41191 Xenopus laevis AAH41191 I 0.716
Q00436 Xenopus laevis Q00436 I 0.716
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.716
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.716
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.716
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.716
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.716
P45441 Xenopus laevis P45441 I 0.716
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.716
AAI06324 Xenopus laevis AAI06324 I 0.716
AAH42217 Xenopus laevis AAH42217 I 0.716
AAI55914 Xenopus laevis AAI55914 I 0.716
AAI30161 Xenopus laevis AAI30161 I 0.716
P21573 Xenopus laevis P21573 I 0.716
CAA42778 Xenopus laevis CAA42778 I 0.716
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.712
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.712
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.703
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.703
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.703
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.703
CSDA Monodelphis domestica ENSMODG00000018248 I 0.703
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.703
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.703