FXR1_RAT (Rattus norvegicus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSRNOG00000011938 T19433_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.875
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000037166 KH 203 262
ENSRNOP00000037166 KH 267 331
ENSRNOP00000059531 KH 203 262
ENSRNOP00000059531 KH 267 331
ENSRNOP00000060667 KH 203 262
ENSRNOP00000060667 KH 267 331

Links

Other KH family RBPs
Other Rattus norvegicus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Fxr1 Mus musculus ENSMUSG00000027680 I 0.883
FXR1 Homo sapiens ENSG00000114416 D 0.875
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.875
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.875
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.875
FXR1 Equus caballus ENSECAG00000007560 I 0.875
FXR1 Canis familiaris ENSCAFG00000011582 I 0.875
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.875
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.875
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.875
FXR1 Echinops telfairi ENSETEG00000006891 I 0.875
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.875
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.875
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.875
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.875
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.875
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.875
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.875
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.867
FXR1 Sus scrofa ENSSSCG00000011769 I 0.867
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.867
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.867
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.859
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.852
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.852
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.848
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.848
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.844
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.844
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.844
AAH73457 Xenopus laevis AAH73457 I 0.836
P51115 Xenopus laevis P51115 I 0.836
AAY79165 Xenopus laevis AAY79165 I 0.836
AAI31885 Xenopus laevis AAI31885 I 0.836
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.836
AAY79166 Xenopus laevis AAY79166 I 0.836
AAC59682 Xenopus laevis AAC59682 I 0.828
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.828
AAH43638 Xenopus laevis AAH43638 I 0.828
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.828
fxr1 Danio rerio ENSDARG00000022968 I 0.760
FXR1 Oryzias latipes ENSORLG00000011787 I 0.760
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.744
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.736
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.729
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.721
FMR1 Canis familiaris ENSCAFG00000019085 I 0.715
FXR2 Oryzias latipes ENSORLG00000011571 I 0.708
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.705
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.705
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.705
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.705
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.705
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.705
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.705
FXR2 Sus scrofa ENSSSCG00000017953 I 0.705
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.705
FXR2 Microcebus murinus ENSMICG00000014799 I 0.705
FXR2 Felis catus ENSFCAG00000009620 I 0.705
FXR2 Homo sapiens ENSG00000129245 D 0.705
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.705
LOC100147323 Equus caballus ENSECAG00000007051 I 0.705
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.705
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.705
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.705
FXR2 Bos taurus ENSBTAG00000005462 I 0.705
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.705
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.705
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.705
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.705
FXR2 Canis familiaris ENSCAFG00000016685 I 0.705
Fxr2 Mus musculus ENSMUSG00000018765 I 0.705