CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FXR2
(
Macaca mulatta
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMMUG00000013510
T19069_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FXR2
M020_0.6
Homo sapiens
DGACRRR
RNAcompete
Ray et al.(2013)
RNCMPT00020
1.000
FXR1
M152_0.6
Homo sapiens
AYGACR
RNAcompete
Ray et al.(2013)
RNCMPT00161
0.783
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000017768
KH
230
289
QEEFTVREDLMGLAIGTHGANIQQARKVPGVTAIELGEETCTFRIYGETPEACRQARSYL
ENSMMUP00000017768
KH
293
361
EDSVQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRVEGDNDKKNPREEGMVPFIFVGTRENISNAQALL
Links
Other
KH
family RBPs
Other
Macaca mulatta
RBPs
94 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FXR2
Monodelphis domestica
ENSMODG00000007179
I
1.000
FXR2
Sus scrofa
ENSSSCG00000017953
I
1.000
FXR2
Erinaceus europaeus
ENSEEUG00000013410
I
1.000
Fxr2
Rattus norvegicus
ENSRNOG00000011876
I
1.000
FXR2
Felis catus
ENSFCAG00000009620
I
1.000
FXR2
Pteropus vampyrus
ENSPVAG00000016306
I
1.000
FXR2
Spermophilus tridecemlineatus
ENSSTOG00000005657
I
1.000
FXR2
Tupaia belangeri
ENSTBEG00000002514
I
1.000
FXR2
Callithrix jacchus
ENSCJAG00000015063
I
1.000
FXR2
Bos taurus
ENSBTAG00000005462
I
1.000
FXR2
Vicugna pacos
ENSVPAG00000000147
I
1.000
FXR2
Cavia porcellus
ENSCPOG00000023303
I
1.000
FXR2
Tursiops truncatus
ENSTTRG00000010231
I
1.000
FXR2
Pan troglodytes
ENSPTRG00000008698
I
1.000
LOC100147323
Equus caballus
ENSECAG00000007051
I
1.000
Fxr2
Mus musculus
ENSMUSG00000018765
I
1.000
FXR2
Microcebus murinus
ENSMICG00000014799
I
1.000
FXR2
Homo sapiens
ENSG00000129245
D
1.000
FXR2
Oryctolagus cuniculus
ENSOCUG00000010393
I
1.000
ENSPPYG00000007930
Pongo pygmaeus
ENSPPYG00000007930
I
1.000
FXR2
Loxodonta africana
ENSLAFG00000001114
I
0.992
FXR2
Canis familiaris
ENSCAFG00000016685
I
0.992
Ame_R012967
Ailuropoda melanoleuca
Ame_R012967
I
0.992
FXR2
Procavia capensis
ENSPCAG00000013184
I
0.992
FXR2
Ochotona princeps
ENSOPRG00000017108
I
0.992
FXR2
Echinops telfairi
ENSETEG00000018613
I
0.992
FXR2
Dasypus novemcinctus
ENSDNOG00000001047
I
0.984
FXR2
Anolis carolinensis
ENSACAG00000000561
I
0.969
FXR2
Myotis lucifugus
ENSMLUG00000003438
I
0.969
FXR2
Oryzias latipes
ENSORLG00000011571
I
0.877
fxr1
Danio rerio
ENSDARG00000022968
I
0.845
FXR2
Tetraodon nigroviridis
ENSTNIG00000005118
I
0.838
FXR2
Takifugu rubripes
ENSTRUG00000010696
I
0.831
FXR1
Oryzias latipes
ENSORLG00000011787
I
0.822
FXR1
Takifugu rubripes
ENSTRUG00000003486
I
0.822
FXR1
Tetraodon nigroviridis
ENSTNIG00000003790
I
0.822
FXR1
Gasterosteus aculeatus
ENSGACG00000006052
I
0.814
FXR2
Choloepus hoffmanni
ENSCHOG00000013177
I
0.814
FXR1
Meleagris gallopavo
ENSMGAG00000009602
I
0.806
Q5F3S6_CHICK
Gallus gallus
ENSGALG00000008864
I
0.806
AAY79166
Xenopus laevis
AAY79166
I
0.798
P51115
Xenopus laevis
P51115
I
0.798
Q7ZTQ5
Xenopus laevis
Q7ZTQ5
I
0.798
FXR1
Anolis carolinensis
ENSACAG00000003918
I
0.798
AAY79165
Xenopus laevis
AAY79165
I
0.798
AAH43638
Xenopus laevis
AAH43638
I
0.798
AAH73457
Xenopus laevis
AAH73457
I
0.798
FXR1
Taeniopygia guttata
ENSTGUG00000010560
I
0.798
AAI31885
Xenopus laevis
AAI31885
I
0.798
FXR1
Pteropus vampyrus
ENSPVAG00000002823
I
0.791
AAC59682
Xenopus laevis
AAC59682
I
0.791
Fxr1
Mus musculus
ENSMUSG00000027680
I
0.791
fxr1
Xenopus tropicalis
ENSXETG00000019441
I
0.791
FXR1
Tursiops truncatus
ENSTTRG00000014698
I
0.783
FXR1
Cavia porcellus
ENSCPOG00000010418
I
0.783
FXR1
Vicugna pacos
ENSVPAG00000003384
I
0.783
ENSPPYG00000014327
Pongo pygmaeus
ENSPPYG00000014327
I
0.783
FXR1
Pan troglodytes
ENSPTRG00000015656
I
0.783
FXR1
Echinops telfairi
ENSETEG00000006891
I
0.783
FXR1
Callithrix jacchus
ENSCJAG00000012802
I
0.783
FXR1
Homo sapiens
ENSG00000114416
D
0.783
FXR1
Tarsius syrichta
ENSTSYG00000001610
I
0.783
FXR1
Canis familiaris
ENSCAFG00000011582
I
0.783
FXR1
Ornithorhynchus anatinus
ENSOANG00000011045
I
0.783
FXR1
Monodelphis domestica
ENSMODG00000021294
I
0.783
FXR1
Myotis lucifugus
ENSMLUG00000006840
I
0.783
FXR1
Macaca mulatta
ENSMMUG00000012105
I
0.783
FXR1
Loxodonta africana
ENSLAFG00000001908
I
0.783
Ame_R018977
Ailuropoda melanoleuca
Ame_R018977
I
0.783
FXR1
Oryctolagus cuniculus
ENSOCUG00000023518
I
0.783
FXR1
Equus caballus
ENSECAG00000007560
I
0.783
FXR1_BOVIN
Bos taurus
ENSBTAG00000016457
I
0.783
FXR1
Gorilla gorilla
ENSGGOG00000009957
I
0.783
CABZ01043311.1
Danio rerio
ENSDARG00000078462
I
0.779
fxr2
Danio rerio
ENSDARG00000016260
I
0.779
FXR1
Sus scrofa
ENSSSCG00000011769
I
0.775
FXR1
Erinaceus europaeus
ENSEEUG00000006823
I
0.767
fmr1
Danio rerio
ENSDARG00000037433
I
0.762
Fxr2
Dipodomys ordii
ENSDORG00000014232
I
0.760
FXR1
Ochotona princeps
ENSOPRG00000009223
I
0.760
FMR1
Oryzias latipes
ENSORLG00000009094
I
0.756
fmr1
Xenopus tropicalis
ENSXETG00000019647
I
0.754
FXR2
Gasterosteus aculeatus
ENSGACG00000019983
I
0.752
Q5ZHM3_CHICK
Gallus gallus
ENSGALG00000009177
I
0.748
AAI12953
Xenopus laevis
AAI12953
I
0.746
AAI70204
Xenopus laevis
AAI70204
I
0.746
FMR1
Canis familiaris
ENSCAFG00000019085
I
0.746
Q2KHP9
Xenopus laevis
Q2KHP9
I
0.746
P51113
Xenopus laevis
P51113
I
0.738
AAC59683
Xenopus laevis
AAC59683
I
0.738
FMR1
Gasterosteus aculeatus
ENSGACG00000018742
I
0.714
nasonia_NCBI_hmm462784
Nasonia vitripennis
nasonia_NCBI_hmm462784
I
0.712
amel4_ncbi_hmm37854
Apis mellifera
amel4_ncbi_hmm37854
I
0.712
FXR1_RAT
Rattus norvegicus
ENSRNOG00000011938
I
0.705