CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FXR2
(
Anolis carolinensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSACAG00000000561
T18394_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FXR2
M020_0.6
Homo sapiens
DGACRRR
RNAcompete
Ray et al.(2013)
RNCMPT00020
0.969
FXR1
M152_0.6
Homo sapiens
AYGACR
RNAcompete
Ray et al.(2013)
RNCMPT00161
0.798
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000000683
KH
224
283
QEEFTVREDLMGLAIGTHGANIQQARKVLGVTAIELDEETCTFRIYGETPEACKQARSFL
ENSACAP00000000683
KH
287
355
EDSVQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRVEGDNDKKNPREEGMVPFIFVGTRENISNAQALL
Links
Other
KH
family RBPs
Other
Anolis carolinensis
RBPs
95 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100147323
Equus caballus
ENSECAG00000007051
I
0.969
FXR2
Tupaia belangeri
ENSTBEG00000002514
I
0.969
FXR2
Pan troglodytes
ENSPTRG00000008698
I
0.969
ENSPPYG00000007930
Pongo pygmaeus
ENSPPYG00000007930
I
0.969
FXR2
Spermophilus tridecemlineatus
ENSSTOG00000005657
I
0.969
FXR2
Sus scrofa
ENSSSCG00000017953
I
0.969
FXR2
Felis catus
ENSFCAG00000009620
I
0.969
FXR2
Homo sapiens
ENSG00000129245
D
0.969
FXR2
Pteropus vampyrus
ENSPVAG00000016306
I
0.969
FXR2
Erinaceus europaeus
ENSEEUG00000013410
I
0.969
Fxr2
Rattus norvegicus
ENSRNOG00000011876
I
0.969
FXR2
Microcebus murinus
ENSMICG00000014799
I
0.969
FXR2
Monodelphis domestica
ENSMODG00000007179
I
0.969
FXR2
Vicugna pacos
ENSVPAG00000000147
I
0.969
Fxr2
Mus musculus
ENSMUSG00000018765
I
0.969
FXR2
Oryctolagus cuniculus
ENSOCUG00000010393
I
0.969
FXR2
Bos taurus
ENSBTAG00000005462
I
0.969
FXR2
Macaca mulatta
ENSMMUG00000013510
I
0.969
FXR2
Tursiops truncatus
ENSTTRG00000010231
I
0.969
FXR2
Cavia porcellus
ENSCPOG00000023303
I
0.969
FXR2
Callithrix jacchus
ENSCJAG00000015063
I
0.969
FXR2
Loxodonta africana
ENSLAFG00000001114
I
0.961
Ame_R012967
Ailuropoda melanoleuca
Ame_R012967
I
0.961
FXR2
Procavia capensis
ENSPCAG00000013184
I
0.961
FXR2
Echinops telfairi
ENSETEG00000018613
I
0.961
FXR2
Ochotona princeps
ENSOPRG00000017108
I
0.961
FXR2
Canis familiaris
ENSCAFG00000016685
I
0.961
FXR2
Dasypus novemcinctus
ENSDNOG00000001047
I
0.953
FXR2
Myotis lucifugus
ENSMLUG00000003438
I
0.938
FXR2
Oryzias latipes
ENSORLG00000011571
I
0.869
FXR1
Oryzias latipes
ENSORLG00000011787
I
0.845
FXR1
Tetraodon nigroviridis
ENSTNIG00000003790
I
0.837
FXR1
Takifugu rubripes
ENSTRUG00000003486
I
0.837
fxr1
Danio rerio
ENSDARG00000022968
I
0.829
FXR2
Tetraodon nigroviridis
ENSTNIG00000005118
I
0.815
FXR1
Gasterosteus aculeatus
ENSGACG00000006052
I
0.814
FXR2
Takifugu rubripes
ENSTRUG00000010696
I
0.808
Fxr1
Mus musculus
ENSMUSG00000027680
I
0.806
FXR1
Pteropus vampyrus
ENSPVAG00000002823
I
0.806
Ame_R018977
Ailuropoda melanoleuca
Ame_R018977
I
0.798
AAH43638
Xenopus laevis
AAH43638
I
0.798
FXR1
Vicugna pacos
ENSVPAG00000003384
I
0.798
FXR1
Tursiops truncatus
ENSTTRG00000014698
I
0.798
ENSPPYG00000014327
Pongo pygmaeus
ENSPPYG00000014327
I
0.798
FXR1
Pan troglodytes
ENSPTRG00000015656
I
0.798
FXR1
Sus scrofa
ENSSSCG00000011769
I
0.798
FXR1
Macaca mulatta
ENSMMUG00000012105
I
0.798
P51115
Xenopus laevis
P51115
I
0.798
AAY79166
Xenopus laevis
AAY79166
I
0.798
FXR1
Equus caballus
ENSECAG00000007560
I
0.798
FXR1
Homo sapiens
ENSG00000114416
D
0.798
FXR1
Cavia porcellus
ENSCPOG00000010418
I
0.798
FXR1
Callithrix jacchus
ENSCJAG00000012802
I
0.798
FXR1_BOVIN
Bos taurus
ENSBTAG00000016457
I
0.798
FXR1
Canis familiaris
ENSCAFG00000011582
I
0.798
Q7ZTQ5
Xenopus laevis
Q7ZTQ5
I
0.798
FXR2
Choloepus hoffmanni
ENSCHOG00000013177
I
0.798
AAY79165
Xenopus laevis
AAY79165
I
0.798
FXR1
Echinops telfairi
ENSETEG00000006891
I
0.798
FXR1
Meleagris gallopavo
ENSMGAG00000009602
I
0.798
FXR1
Loxodonta africana
ENSLAFG00000001908
I
0.798
FXR1
Myotis lucifugus
ENSMLUG00000006840
I
0.798
FXR1
Monodelphis domestica
ENSMODG00000021294
I
0.798
FXR1
Oryctolagus cuniculus
ENSOCUG00000023518
I
0.798
FXR1
Ornithorhynchus anatinus
ENSOANG00000011045
I
0.798
AAI31885
Xenopus laevis
AAI31885
I
0.798
FXR1
Gorilla gorilla
ENSGGOG00000009957
I
0.798
Q5F3S6_CHICK
Gallus gallus
ENSGALG00000008864
I
0.798
AAH73457
Xenopus laevis
AAH73457
I
0.798
FXR1
Anolis carolinensis
ENSACAG00000003918
I
0.791
FXR1
Taeniopygia guttata
ENSTGUG00000010560
I
0.791
AAC59682
Xenopus laevis
AAC59682
I
0.791
fxr1
Xenopus tropicalis
ENSXETG00000019441
I
0.791
FXR1
Tarsius syrichta
ENSTSYG00000001610
I
0.783
FXR1
Erinaceus europaeus
ENSEEUG00000006823
I
0.783
fxr2
Danio rerio
ENSDARG00000016260
I
0.772
CABZ01043311.1
Danio rerio
ENSDARG00000078462
I
0.772
FXR1
Ochotona princeps
ENSOPRG00000009223
I
0.767
FMR1
Canis familiaris
ENSCAFG00000019085
I
0.762
FXR2
Gasterosteus aculeatus
ENSGACG00000019983
I
0.759
FMR1
Oryzias latipes
ENSORLG00000009094
I
0.756
fmr1
Xenopus tropicalis
ENSXETG00000019647
I
0.754
fmr1
Danio rerio
ENSDARG00000037433
I
0.754
Q5ZHM3_CHICK
Gallus gallus
ENSGALG00000009177
I
0.748
Q2KHP9
Xenopus laevis
Q2KHP9
I
0.746
AAI70204
Xenopus laevis
AAI70204
I
0.746
AAI12953
Xenopus laevis
AAI12953
I
0.746
Fxr2
Dipodomys ordii
ENSDORG00000014232
I
0.744
P51113
Xenopus laevis
P51113
I
0.738
AAC59683
Xenopus laevis
AAC59683
I
0.738
FXR1_RAT
Rattus norvegicus
ENSRNOG00000011938
I
0.721
amel4_ncbi_hmm37854
Apis mellifera
amel4_ncbi_hmm37854
I
0.720
FMR1
Gasterosteus aculeatus
ENSGACG00000018742
I
0.714
nasonia_NCBI_hmm462784
Nasonia vitripennis
nasonia_NCBI_hmm462784
I
0.712
AAEL009326
Aedes aegypti
AAEL009326
I
0.705