FXR1 (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000006052 T18828_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.829
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000008025 KH 220 279
ENSGACP00000008025 KH 283 351
ENSGACP00000008029 KH 220 279
ENSGACP00000008029 KH 283 351

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FXR1 Oryzias latipes ENSORLG00000011787 I 0.899
fxr1 Danio rerio ENSDARG00000022968 I 0.899
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.891
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.891
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.837
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.837
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.837
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.837
Fxr1 Mus musculus ENSMUSG00000027680 I 0.837
AAH73457 Xenopus laevis AAH73457 I 0.829
AAH43638 Xenopus laevis AAH43638 I 0.829
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.829
AAI31885 Xenopus laevis AAI31885 I 0.829
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.829
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.829
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.829
AAY79166 Xenopus laevis AAY79166 I 0.829
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.829
FXR1 Equus caballus ENSECAG00000007560 I 0.829
FXR1 Echinops telfairi ENSETEG00000006891 I 0.829
FXR1 Homo sapiens ENSG00000114416 D 0.829
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.829
FXR1 Canis familiaris ENSCAFG00000011582 I 0.829
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.829
P51115 Xenopus laevis P51115 I 0.829
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.829
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.829
AAY79165 Xenopus laevis AAY79165 I 0.829
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.829
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.829
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.829
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.829
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.829
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.829
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.829
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.829
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.829
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.829
FXR1 Sus scrofa ENSSSCG00000011769 I 0.822
FXR2 Canis familiaris ENSCAFG00000016685 I 0.822
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.822
AAC59682 Xenopus laevis AAC59682 I 0.822
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.822
FXR2 Oryzias latipes ENSORLG00000011571 I 0.815
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.814
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.814
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.814
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.814
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.814
FXR2 Felis catus ENSFCAG00000009620 I 0.814
FXR2 Homo sapiens ENSG00000129245 D 0.814
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.814
LOC100147323 Equus caballus ENSECAG00000007051 I 0.814
FXR2 Microcebus murinus ENSMICG00000014799 I 0.814
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.814
FXR2 Bos taurus ENSBTAG00000005462 I 0.814
Fxr2 Mus musculus ENSMUSG00000018765 I 0.814
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.814
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.814
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.814
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.814
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.814
FXR2 Sus scrofa ENSSSCG00000017953 I 0.814
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.814
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.814
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.814
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.814
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.806
FXR2 Procavia capensis ENSPCAG00000013184 I 0.806
FXR2 Echinops telfairi ENSETEG00000018613 I 0.806
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.798
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.798
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.783
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.769
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.762
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.762
AAI70204 Xenopus laevis AAI70204 I 0.754
Q2KHP9 Xenopus laevis Q2KHP9 I 0.754
AAI12953 Xenopus laevis AAI12953 I 0.754
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.748
P51113 Xenopus laevis P51113 I 0.746
FMR1 Canis familiaris ENSCAFG00000019085 I 0.746
AAC59683 Xenopus laevis AAC59683 I 0.746
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.729
fxr2 Danio rerio ENSDARG00000016260 I 0.724
CABZ01043311.1 Danio rerio ENSDARG00000078462 I 0.724
FMR1 Oryzias latipes ENSORLG00000009094 I 0.718
fmr1 Danio rerio ENSDARG00000037433 I 0.715