fxr1 (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000022968 T18620_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.853
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.845
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000095251 KH 220 279
ENSDARP00000095251 KH 283 351
ENSDARP00000095253 KH 220 279
ENSDARP00000095253 KH 283 351

Links

Other KH family RBPs
Other Danio rerio RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FXR1 Oryzias latipes ENSORLG00000011787 I 0.907
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.899
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.876
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.876
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.868
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.860
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.860
Fxr1 Mus musculus ENSMUSG00000027680 I 0.860
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.853
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.853
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.853
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.853
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.853
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.853
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.853
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.853
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.853
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.853
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.853
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.853
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.853
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.853
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.853
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.853
FXR1 Canis familiaris ENSCAFG00000011582 I 0.853
FXR1 Equus caballus ENSECAG00000007560 I 0.853
FXR1 Homo sapiens ENSG00000114416 D 0.853
FXR1 Echinops telfairi ENSETEG00000006891 I 0.853
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.853
FXR2 Canis familiaris ENSCAFG00000016685 I 0.853
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.853
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.853
FXR2 Oryzias latipes ENSORLG00000011571 I 0.846
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.845
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.845
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.845
FXR2 Sus scrofa ENSSSCG00000017953 I 0.845
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.845
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.845
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.845
FXR2 Bos taurus ENSBTAG00000005462 I 0.845
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.845
LOC100147323 Equus caballus ENSECAG00000007051 I 0.845
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.845
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.845
FXR1 Sus scrofa ENSSSCG00000011769 I 0.845
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.845
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.845
Fxr2 Mus musculus ENSMUSG00000018765 I 0.845
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.845
FXR2 Microcebus murinus ENSMICG00000014799 I 0.845
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.845
FXR2 Homo sapiens ENSG00000129245 D 0.845
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.845
FXR2 Felis catus ENSFCAG00000009620 I 0.845
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.845
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.845
AAI31885 Xenopus laevis AAI31885 I 0.837
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.837
FXR2 Echinops telfairi ENSETEG00000018613 I 0.837
AAH73457 Xenopus laevis AAH73457 I 0.837
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.837
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.837
FXR2 Procavia capensis ENSPCAG00000013184 I 0.837
P51115 Xenopus laevis P51115 I 0.837
AAH43638 Xenopus laevis AAH43638 I 0.837
AAY79165 Xenopus laevis AAY79165 I 0.837
AAY79166 Xenopus laevis AAY79166 I 0.837
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.829
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.829
AAC59682 Xenopus laevis AAC59682 I 0.829
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.822
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.814
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.808
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.800
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.760
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.754
fxr2 Danio rerio ENSDARG00000016260 I 0.752
CABZ01043311.1 Danio rerio ENSDARG00000078462 I 0.752
AAI70204 Xenopus laevis AAI70204 I 0.746
Q2KHP9 Xenopus laevis Q2KHP9 I 0.746
AAI12953 Xenopus laevis AAI12953 I 0.746
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.740
P51113 Xenopus laevis P51113 I 0.738
FMR1 Canis familiaris ENSCAFG00000019085 I 0.738
AAC59683 Xenopus laevis AAC59683 I 0.738
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.738
FMR1 Oryzias latipes ENSORLG00000009094 I 0.733
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.727
fmr1 Danio rerio ENSDARG00000037433 I 0.715
FXR2 Choloepus hoffmanni ENSCHOG00000013177 I 0.713
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.705
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.705
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.705
AAEL009326 Aedes aegypti AAEL009326 I 0.705
PHUM440700 Pediculus humanus PHUM440700 I 0.705