fxr1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000019441 T19770_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.953
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.791
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000042145 KH 220 279
ENSXETP00000042145 KH 284 351
ENSXETP00000042147 KH 220 279
ENSXETP00000042147 KH 284 351
ENSXETP00000042149 KH 220 279
ENSXETP00000042149 KH 284 351
ENSXETP00000042154 KH 172 231
ENSXETP00000042154 KH 236 303

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAY79166 Xenopus laevis AAY79166 I 0.984
AAH73457 Xenopus laevis AAH73457 I 0.984
AAI31885 Xenopus laevis AAI31885 I 0.984
AAY79165 Xenopus laevis AAY79165 I 0.984
P51115 Xenopus laevis P51115 I 0.984
AAC59682 Xenopus laevis AAC59682 I 0.977
AAH43638 Xenopus laevis AAH43638 I 0.977
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.977
Fxr1 Mus musculus ENSMUSG00000027680 I 0.961
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.961
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.961
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.953
FXR1 Pan troglodytes ENSPTRG00000015656 I 0.953
FXR1 Loxodonta africana ENSLAFG00000001908 I 0.953
FXR1 Callithrix jacchus ENSCJAG00000012802 I 0.953
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.953
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 0.953
FXR1 Equus caballus ENSECAG00000007560 I 0.953
FXR1 Homo sapiens ENSG00000114416 D 0.953
FXR1 Tursiops truncatus ENSTTRG00000014698 I 0.953
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 0.953
FXR1 Echinops telfairi ENSETEG00000006891 I 0.953
FXR1 Gorilla gorilla ENSGGOG00000009957 I 0.953
FXR1 Canis familiaris ENSCAFG00000011582 I 0.953
FXR1 Cavia porcellus ENSCPOG00000010418 I 0.953
FXR1 Myotis lucifugus ENSMLUG00000006840 I 0.953
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 0.953
FXR1 Vicugna pacos ENSVPAG00000003384 I 0.953
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 0.953
FXR1 Macaca mulatta ENSMMUG00000012105 I 0.953
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.945
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.945
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.945
FXR1 Sus scrofa ENSSSCG00000011769 I 0.945
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.945
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.938
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.922
fxr1 Danio rerio ENSDARG00000022968 I 0.845
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.844
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.837
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.829
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.822
FXR1 Oryzias latipes ENSORLG00000011787 I 0.822
FXR2 Oryzias latipes ENSORLG00000011571 I 0.808
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.798
FXR2 Canis familiaris ENSCAFG00000016685 I 0.798
Fxr2 Mus musculus ENSMUSG00000018765 I 0.791
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.791
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.791
FXR2 Sus scrofa ENSSSCG00000017953 I 0.791
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.791
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.791
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.791
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.791
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.791
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.791
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.791
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.791
FXR2 Homo sapiens ENSG00000129245 D 0.791
FXR2 Bos taurus ENSBTAG00000005462 I 0.791
LOC100147323 Equus caballus ENSECAG00000007051 I 0.791
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.791
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.791
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.791
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.791
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.791
FXR2 Microcebus murinus ENSMICG00000014799 I 0.791
FXR2 Felis catus ENSFCAG00000009620 I 0.791
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.791
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.789
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.789
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.786
FMR1 Canis familiaris ENSCAFG00000019085 I 0.785
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.783
FXR2 Procavia capensis ENSPCAG00000013184 I 0.783
FXR2 Echinops telfairi ENSETEG00000018613 I 0.783
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.777
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.775
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.775
AAI70204 Xenopus laevis AAI70204 I 0.769
AAI12953 Xenopus laevis AAI12953 I 0.769
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.769
Q2KHP9 Xenopus laevis Q2KHP9 I 0.769
P51113 Xenopus laevis P51113 I 0.762
AAC59683 Xenopus laevis AAC59683 I 0.762
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.762
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.735
FMR1 Oryzias latipes ENSORLG00000009094 I 0.733
fmr1 Danio rerio ENSDARG00000037433 I 0.731
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.727
PHUM440700 Pediculus humanus PHUM440700 I 0.720
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.714
estExt_fgenesh1_pg.C_690020 Daphnia pulex estExt_fgenesh1_pg.C_690020 N 0.705
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.703