FXR1 (Homo sapiens)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSG00000114416 T18793_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6		 Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M152_0.6 KH 51 110
M152_0.6 KH 115 182

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000307633 KH 135 194
ENSP00000307633 KH 199 266
ENSP00000350170 KH 220 279
ENSP00000350170 KH 284 351
ENSP00000376412 KH 135 194
ENSP00000376412 KH 199 266
ENSP00000376414 KH 205 264
ENSP00000376414 KH 269 336
ENSP00000388828 KH 220 279
ENSP00000388828 KH 284 351
ENSP00000390101 KH 135 194
ENSP00000390101 KH 199 266
ENSP00000414396 KH 205 264
ENSP00000414396 KH 269 336
ENSP00000418097 KH 207 266
ENSP00000418097 KH 271 338
ENSP00000420515 KH 135 194
ENSP00000420515 KH 199 266
ENSP00000420643 KH 171 230
ENSP00000420643 KH 235 302

Links

Other KH family RBPs
Other Homo sapiens RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000014327 Pongo pygmaeus ENSPPYG00000014327 I 1.000
FXR1 Pan troglodytes ENSPTRG00000015656 I 1.000
FXR1 Cavia porcellus ENSCPOG00000010418 I 1.000
FXR1 Oryctolagus cuniculus ENSOCUG00000023518 I 1.000
FXR1 Macaca mulatta ENSMMUG00000012105 I 1.000
FXR1 Canis familiaris ENSCAFG00000011582 I 1.000
FXR1_BOVIN Bos taurus ENSBTAG00000016457 I 1.000
Ame_R018977 Ailuropoda melanoleuca Ame_R018977 I 1.000
FXR1 Vicugna pacos ENSVPAG00000003384 I 1.000
FXR1 Tursiops truncatus ENSTTRG00000014698 I 1.000
FXR1 Myotis lucifugus ENSMLUG00000006840 I 1.000
FXR1 Callithrix jacchus ENSCJAG00000012802 I 1.000
FXR1 Loxodonta africana ENSLAFG00000001908 I 1.000
FXR1 Gorilla gorilla ENSGGOG00000009957 I 1.000
FXR1 Echinops telfairi ENSETEG00000006891 I 1.000
FXR1 Equus caballus ENSECAG00000007560 I 1.000
FXR1 Pteropus vampyrus ENSPVAG00000002823 I 0.992
FXR1 Ornithorhynchus anatinus ENSOANG00000011045 I 0.992
FXR1 Sus scrofa ENSSSCG00000011769 I 0.992
Fxr1 Mus musculus ENSMUSG00000027680 I 0.992
FXR1 Monodelphis domestica ENSMODG00000021294 I 0.992
FXR1 Erinaceus europaeus ENSEEUG00000006823 I 0.984
FXR1 Tarsius syrichta ENSTSYG00000001610 I 0.977
Q5F3S6_CHICK Gallus gallus ENSGALG00000008864 I 0.969
FXR1 Meleagris gallopavo ENSMGAG00000009602 I 0.969
FXR1 Anolis carolinensis ENSACAG00000003918 I 0.961
FXR1 Taeniopygia guttata ENSTGUG00000010560 I 0.961
FXR1 Ochotona princeps ENSOPRG00000009223 I 0.953
fxr1 Xenopus tropicalis ENSXETG00000019441 I 0.953
AAY79165 Xenopus laevis AAY79165 I 0.938
AAI31885 Xenopus laevis AAI31885 I 0.938
AAH73457 Xenopus laevis AAH73457 I 0.938
AAY79166 Xenopus laevis AAY79166 I 0.938
P51115 Xenopus laevis P51115 I 0.938
AAH43638 Xenopus laevis AAH43638 I 0.930
Q7ZTQ5 Xenopus laevis Q7ZTQ5 I 0.930
AAC59682 Xenopus laevis AAC59682 I 0.930
FXR1_RAT Rattus norvegicus ENSRNOG00000011938 I 0.875
FXR1 Oryzias latipes ENSORLG00000011787 I 0.853
fxr1 Danio rerio ENSDARG00000022968 I 0.853
FXR1 Dasypus novemcinctus ENSDNOG00000019065 I 0.836
Fxr1 Dipodomys ordii ENSDORG00000005853 I 0.836
FXR1 Takifugu rubripes ENSTRUG00000003486 I 0.829
FXR1 Gasterosteus aculeatus ENSGACG00000006052 I 0.829
FXR1 Tetraodon nigroviridis ENSTNIG00000003790 I 0.822
FMR1 Canis familiaris ENSCAFG00000019085 I 0.808
FXR2 Anolis carolinensis ENSACAG00000000561 I 0.798
Q5ZHM3_CHICK Gallus gallus ENSGALG00000009177 I 0.794
FXR2 Oryzias latipes ENSORLG00000011571 I 0.792
FXR2 Canis familiaris ENSCAFG00000016685 I 0.791
Ame_R012967 Ailuropoda melanoleuca Ame_R012967 I 0.791
FXR2 Felis catus ENSFCAG00000009620 I 0.783
LOC100147323 Equus caballus ENSECAG00000007051 I 0.783
FXR2 Erinaceus europaeus ENSEEUG00000013410 I 0.783
FXR2 Bos taurus ENSBTAG00000005462 I 0.783
FXR2 Callithrix jacchus ENSCJAG00000015063 I 0.783
FXR2 Cavia porcellus ENSCPOG00000023303 I 0.783
FXR2 Tursiops truncatus ENSTTRG00000010231 I 0.783
FXR2 Pan troglodytes ENSPTRG00000008698 I 0.783
ENSPPYG00000007930 Pongo pygmaeus ENSPPYG00000007930 I 0.783
Fxr2 Rattus norvegicus ENSRNOG00000011876 I 0.783
FXR2 Sus scrofa ENSSSCG00000017953 I 0.783
FXR2 Spermophilus tridecemlineatus ENSSTOG00000005657 I 0.783
FXR2 Ochotona princeps ENSOPRG00000017108 I 0.783
FXR2 Oryctolagus cuniculus ENSOCUG00000010393 I 0.783
FXR2 Microcebus murinus ENSMICG00000014799 I 0.783
FXR2 Homo sapiens ENSG00000129245 D 0.783
FXR2 Macaca mulatta ENSMMUG00000013510 I 0.783
FXR2 Monodelphis domestica ENSMODG00000007179 I 0.783
Fxr2 Mus musculus ENSMUSG00000018765 I 0.783
FXR2 Tupaia belangeri ENSTBEG00000002514 I 0.783
FXR2 Pteropus vampyrus ENSPVAG00000016306 I 0.783
FXR2 Vicugna pacos ENSVPAG00000000147 I 0.783
fmr1 Xenopus tropicalis ENSXETG00000019647 I 0.777
FXR2 Echinops telfairi ENSETEG00000018613 I 0.775
FXR2 Loxodonta africana ENSLAFG00000001114 I 0.775
FXR2 Procavia capensis ENSPCAG00000013184 I 0.775
AAI12953 Xenopus laevis AAI12953 I 0.769
AAI70204 Xenopus laevis AAI70204 I 0.769
Q2KHP9 Xenopus laevis Q2KHP9 I 0.769
FXR2 Dasypus novemcinctus ENSDNOG00000001047 I 0.767
P51113 Xenopus laevis P51113 I 0.762
AAC59683 Xenopus laevis AAC59683 I 0.762
FMR1 Oryzias latipes ENSORLG00000009094 I 0.756
FXR2 Takifugu rubripes ENSTRUG00000010696 I 0.754
FXR2 Myotis lucifugus ENSMLUG00000003438 I 0.752
FXR2 Tetraodon nigroviridis ENSTNIG00000005118 I 0.746
FMR1 Gasterosteus aculeatus ENSGACG00000018742 I 0.737
fmr1 Danio rerio ENSDARG00000037433 I 0.723
PHUM440700 Pediculus humanus PHUM440700 I 0.720
nasonia_NCBI_hmm462784 Nasonia vitripennis nasonia_NCBI_hmm462784 I 0.712
estExt_fgenesh1_pg.C_690020 Daphnia pulex estExt_fgenesh1_pg.C_690020 N 0.705
amel4_ncbi_hmm37854 Apis mellifera amel4_ncbi_hmm37854 I 0.705
FXR2 Gasterosteus aculeatus ENSGACG00000019983 I 0.703