CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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D3ZJL5_RAT
(
Rattus norvegicus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSRNOG00000029014
T19447_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
hnRNPK
M026_0.6
Homo sapiens
CCAWMCC
RNAcompete
Ray et al.(2013)
RNCMPT00026
0.872
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000046390
KH
47
94
ILLQSKNGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIX
ENSRNOP00000046390
KH
94
157
XLRLLIHQSLAGGIIGVKGAKIKELQENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKII
ENSRNOP00000046390
KH
336
398
TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKTDEPLEGSEDRIITITGTQDQIQNTQYLL
Links
Other
KH
family RBPs
Other
Rattus norvegicus
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPK
Pteropus vampyrus
ENSPVAG00000009078
I
0.880
HNRNPK
Macropus eugenii
ENSMEUG00000006975
I
0.872
ENSMMUG00000018871
Macaca mulatta
ENSMMUG00000018871
I
0.872
HNRNPK
Gorilla gorilla
ENSGGOG00000015500
I
0.872
ENSMODG00000008402
Monodelphis domestica
ENSMODG00000008402
I
0.872
HNRNPK
Gallus gallus
ENSGALG00000012591
I
0.872
HNRNPK
Callithrix jacchus
ENSCJAG00000003750
I
0.872
HNRNPK
Equus caballus
ENSECAG00000025104
I
0.872
HNRNPK
Monodelphis domestica
ENSMODG00000018992
I
0.872
Hnrnpk
Mus musculus
ENSMUSG00000021546
I
0.872
HNRNPK
Pan troglodytes
ENSPTRG00000021061
I
0.872
Hnrnpk
Rattus norvegicus
ENSRNOG00000019113
I
0.872
ENSPPYG00000019327
Pongo pygmaeus
ENSPPYG00000019327
I
0.872
HNRNPK
Otolemur garnettii
ENSOGAG00000007478
I
0.872
HNRNPK
Ornithorhynchus anatinus
ENSOANG00000014612
I
0.872
HNRPK_RABIT
Oryctolagus cuniculus
ENSOCUG00000010364
I
0.872
HNRNPK
Choloepus hoffmanni
ENSCHOG00000010832
I
0.872
hnRNPK
Homo sapiens
ENSG00000165119
D
0.872
HNRNPK
Tarsius syrichta
ENSTSYG00000001196
I
0.872
HNRNPK
Taeniopygia guttata
ENSTGUG00000003138
I
0.872
Ame_R002812
Ailuropoda melanoleuca
Ame_R002812
I
0.872
HNRPK_CHICK
Gallus gallus
ENSGALG00000014366
I
0.867
HNRNPK
Anolis carolinensis
ENSACAG00000001479
I
0.867
HNRNPK
Loxodonta africana
ENSLAFG00000026567
I
0.867
HNRNPK
Tursiops truncatus
ENSTTRG00000016693
I
0.867
HNRPK_BOVIN
Bos taurus
ENSBTAG00000021131
I
0.867
HNRNPK
Erinaceus europaeus
ENSEEUG00000014624
I
0.867
HNRNPK
Echinops telfairi
ENSETEG00000016294
I
0.867
Gm7964
Mus musculus
ENSMUSG00000063902
I
0.856
ENSTTRG00000004906
Tursiops truncatus
ENSTTRG00000004906
I
0.856
XM_533511.2
Canis familiaris
ENSCAFG00000001399
I
0.856
hnrpkl
Danio rerio
ENSDARG00000007034
I
0.851
HNRNPK
Tupaia belangeri
ENSTBEG00000001289
I
0.851
AAH44711
Xenopus laevis
AAH44711
I
0.846
AAB26047
Xenopus laevis
AAB26047
I
0.840
XM_855974.1
Canis familiaris
ENSCAFG00000017503
I
0.835
HNRNPK
Takifugu rubripes
ENSTRUG00000000535
I
0.830
HNRNPK
Felis catus
ENSFCAG00000014862
I
0.824
hnrnpk
Xenopus tropicalis
ENSXETG00000011722
I
0.819
HNRNPK
Gasterosteus aculeatus
ENSGACG00000007581
I
0.819
HNRNPK
Oryzias latipes
ENSORLG00000005161
I
0.814
ENSPPYG00000013626
Pongo pygmaeus
ENSPPYG00000013626
I
0.809
ENSOCUG00000025925
Oryctolagus cuniculus
ENSOCUG00000025925
I
0.803
HNRNPK
Tetraodon nigroviridis
ENSTNIG00000006005
I
0.803
HNRNPK
Takifugu rubripes
ENSTRUG00000010659
I
0.803
hnrnpk
Danio rerio
ENSDARG00000018914
I
0.798
HNRNPK
Procavia capensis
ENSPCAG00000016196
I
0.788
HNRNPK
Ochotona princeps
ENSOPRG00000015723
I
0.788
HNRNPK
Oryzias latipes
ENSORLG00000004704
I
0.787
ENSRNOG00000013016
Rattus norvegicus
ENSRNOG00000013016
I
0.777
HNRNPK
Tetraodon nigroviridis
ENSTNIG00000007554
I
0.756