CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH44711
(
Xenopus laevis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
AAH44711
T22117_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
hnRNPK
M026_0.6
Homo sapiens
CCAWMCC
RNAcompete
Ray et al.(2013)
RNCMPT00026
0.973
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH44711
KH
41
101
ELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSMSADIETIGEILKKI
AAH44711
KH
119
182
ELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKVI
AAH44711
KH
322
384
TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQIQNAQFLL
Links
Other
KH
family RBPs
Other
Xenopus laevis
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAB26047
Xenopus laevis
AAB26047
I
0.984
Hnrnpk
Mus musculus
ENSMUSG00000021546
I
0.973
HNRPK_RABIT
Oryctolagus cuniculus
ENSOCUG00000010364
I
0.973
HNRNPK
Monodelphis domestica
ENSMODG00000018992
I
0.973
ENSMMUG00000018871
Macaca mulatta
ENSMMUG00000018871
I
0.973
HNRNPK
Macropus eugenii
ENSMEUG00000006975
I
0.973
HNRNPK
Otolemur garnettii
ENSOGAG00000007478
I
0.973
ENSMODG00000008402
Monodelphis domestica
ENSMODG00000008402
I
0.973
ENSPPYG00000019327
Pongo pygmaeus
ENSPPYG00000019327
I
0.973
HNRNPK
Tarsius syrichta
ENSTSYG00000001196
I
0.973
Ame_R002812
Ailuropoda melanoleuca
Ame_R002812
I
0.973
HNRNPK
Taeniopygia guttata
ENSTGUG00000003138
I
0.973
Hnrnpk
Rattus norvegicus
ENSRNOG00000019113
I
0.973
HNRNPK
Pan troglodytes
ENSPTRG00000021061
I
0.973
HNRNPK
Gorilla gorilla
ENSGGOG00000015500
I
0.973
HNRNPK
Ornithorhynchus anatinus
ENSOANG00000014612
I
0.973
HNRNPK
Equus caballus
ENSECAG00000025104
I
0.973
hnRNPK
Homo sapiens
ENSG00000165119
D
0.973
HNRNPK
Choloepus hoffmanni
ENSCHOG00000010832
I
0.973
HNRNPK
Gallus gallus
ENSGALG00000012591
I
0.973
HNRNPK
Callithrix jacchus
ENSCJAG00000003750
I
0.973
HNRNPK
Tursiops truncatus
ENSTTRG00000016693
I
0.968
HNRPK_CHICK
Gallus gallus
ENSGALG00000014366
I
0.968
HNRNPK
Anolis carolinensis
ENSACAG00000001479
I
0.968
HNRPK_BOVIN
Bos taurus
ENSBTAG00000021131
I
0.968
HNRNPK
Loxodonta africana
ENSLAFG00000026567
I
0.968
HNRNPK
Erinaceus europaeus
ENSEEUG00000014624
I
0.968
HNRNPK
Echinops telfairi
ENSETEG00000016294
I
0.968
Gm7964
Mus musculus
ENSMUSG00000063902
I
0.957
ENSTTRG00000004906
Tursiops truncatus
ENSTTRG00000004906
I
0.957
hnrnpk
Xenopus tropicalis
ENSXETG00000011722
I
0.957
HNRNPK
Tupaia belangeri
ENSTBEG00000001289
I
0.952
hnrpkl
Danio rerio
ENSDARG00000007034
I
0.952
XM_533511.2
Canis familiaris
ENSCAFG00000001399
I
0.952
XM_855974.1
Canis familiaris
ENSCAFG00000017503
I
0.936
HNRNPK
Takifugu rubripes
ENSTRUG00000000535
I
0.931
HNRNPK
Felis catus
ENSFCAG00000014862
I
0.926
HNRNPK
Pteropus vampyrus
ENSPVAG00000009078
I
0.920
HNRNPK
Gasterosteus aculeatus
ENSGACG00000007581
I
0.915
ENSPPYG00000013626
Pongo pygmaeus
ENSPPYG00000013626
I
0.910
HNRNPK
Oryzias latipes
ENSORLG00000005161
I
0.910
HNRNPK
Tetraodon nigroviridis
ENSTNIG00000006005
I
0.904
HNRNPK
Takifugu rubripes
ENSTRUG00000010659
I
0.904
ENSOCUG00000025925
Oryctolagus cuniculus
ENSOCUG00000025925
I
0.899
hnrnpk
Danio rerio
ENSDARG00000018914
I
0.894
D3ZJL5_RAT
Rattus norvegicus
ENSRNOG00000029014
I
0.846
ENSRNOG00000013016
Rattus norvegicus
ENSRNOG00000013016
I
0.840
HNRNPK
Oryzias latipes
ENSORLG00000004704
I
0.819
HNRNPK
Procavia capensis
ENSPCAG00000016196
I
0.803
HNRNPK
Ochotona princeps
ENSOPRG00000015723
I
0.803
ENSCPOG00000005024
Cavia porcellus
ENSCPOG00000005024
I
0.787
HNRNPK
Tetraodon nigroviridis
ENSTNIG00000007554
I
0.787