KHSRP (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000014067 T19619_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.802
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.802
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.802
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.802
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017074 KH 87 149
ENSTNIP00000017074 KH 167 231
ENSTNIP00000017074 KH 259 321
ENSTNIP00000017074 KH 359 424

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.981
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.895
KHSRP Oryzias latipes ENSORLG00000011882 I 0.860
KHSRP Danio rerio ENSDARG00000026489 I 0.833
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.829
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.805
Khsrp Mus musculus ENSMUSG00000007670 I 0.802
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.802
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.802
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.802
KHSRP Homo sapiens ENSG00000088247 D 0.802
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.802
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.802
KHSRP Sus scrofa ENSSSCG00000013538 I 0.802
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.802
KHSRP Felis catus ENSFCAG00000003731 I 0.802
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.802
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.802
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.802
KHSRP Canis familiaris ENSCAFG00000018667 I 0.802
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.802
LOC505564 Bos taurus ENSBTAG00000021018 I 0.802
LOC100065608 Equus caballus ENSECAG00000018305 I 0.802
AAI61696 Xenopus laevis AAI61696 I 0.802
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.798
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.798
AAN77160 Xenopus laevis AAN77160 I 0.798
AAI69923 Xenopus laevis AAI69923 I 0.798
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.798
KHSRP Microcebus murinus ENSMICG00000007863 I 0.794
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.767
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.759
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.743
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.724
KHSRP Echinops telfairi ENSETEG00000004793 I 0.720
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.705
FUBP1 Homo sapiens ENSG00000162613 I 0.700
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.700
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.700
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.700
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.700