KHSRP (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000010395 T19645_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.809
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.809
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.809
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000026175 KH 97 159
ENSTRUP00000026175 KH 177 241
ENSTRUP00000026175 KH 271 333
ENSTRUP00000026175 KH 374 439
ENSTRUP00000026176 KH 87 149
ENSTRUP00000026176 KH 167 231
ENSTRUP00000026176 KH 261 323
ENSTRUP00000026176 KH 364 429
ENSTRUP00000026177 KH 103 165
ENSTRUP00000026177 KH 183 247
ENSTRUP00000026177 KH 277 339
ENSTRUP00000026177 KH 380 445
ENSTRUP00000026178 KH 79 141
ENSTRUP00000026178 KH 159 223
ENSTRUP00000026178 KH 253 315
ENSTRUP00000026178 KH 356 421

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.981
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.891
KHSRP Oryzias latipes ENSORLG00000011882 I 0.856
KHSRP Danio rerio ENSDARG00000026489 I 0.840
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.829
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.809
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.809
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.809
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.809
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.809
LOC100065608 Equus caballus ENSECAG00000018305 I 0.809
KHSRP Homo sapiens ENSG00000088247 D 0.809
KHSRP Felis catus ENSFCAG00000003731 I 0.809
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.809
Khsrp Mus musculus ENSMUSG00000007670 I 0.809
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.809
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.809
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.809
AAN77160 Xenopus laevis AAN77160 I 0.809
AAI69923 Xenopus laevis AAI69923 I 0.809
AAI61696 Xenopus laevis AAI61696 I 0.809
LOC505564 Bos taurus ENSBTAG00000021018 I 0.809
KHSRP Canis familiaris ENSCAFG00000018667 I 0.809
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.809
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.809
KHSRP Sus scrofa ENSSSCG00000013538 I 0.809
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.805
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.805
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.805
KHSRP Microcebus murinus ENSMICG00000007863 I 0.798
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.774
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.763
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.751
khsrp Xenopus tropicalis ENSXETG00000021862 I 0.732
KHSRP Echinops telfairi ENSETEG00000004793 I 0.728
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.713
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.708
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.708
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.708
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.708
FUBP1 Homo sapiens ENSG00000162613 I 0.708
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.704
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.704
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.704
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.704
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.704
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.704
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.704
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.704
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.704
Fubp1 Mus musculus ENSMUSG00000028034 I 0.704
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.704
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.704
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.704
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.704
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.704
FUBP1 Equus caballus ENSECAG00000010867 I 0.704
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.704
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.702
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.700
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.700