CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHSRP
(
Oryzias latipes
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSORLG00000011882
T19291_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.809
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.809
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.809
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.809
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000014888
KH
116
178
MEECKVPDSMVGLIIGRGGEQINKIQHESGCKVQIAHDSAGLPERSISLTGSLDAIQRARALI
ENSORLP00000014888
KH
196
260
MQEMIIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDGSQPPNVDKPLRIIGDPYKVQQAKEMV
ENSORLP00000014888
KH
286
348
GIEIPVPRQSVGVVIGRNGEMIKKIQNDAGVKIQFKPDDGTAPEKIAHIMGPPDQCQHAVSII
ENSORLP00000014888
KH
386
449
EMTFSIPAHKCGIVIGRGGENIKSISQQTGAFVEVCRQPNGDPNFKLFTIRGSPQEIDHAKQLI
Links
Other
KH
family RBPs
Other
Oryzias latipes
RBPs
66 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.879
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.860
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.856
KHSRP
Danio rerio
ENSDARG00000026489
I
0.837
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.825
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.813
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.809
KHSRP
Felis catus
ENSFCAG00000003731
I
0.809
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.809
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.809
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.809
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.809
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.809
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.809
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.809
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.809
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.809
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.809
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.809
KHSRP
Homo sapiens
ENSG00000088247
D
0.809
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.809
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.809
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.809
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.805
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.805
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.805
AAI61696
Xenopus laevis
AAI61696
I
0.798
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.798
AAN77160
Xenopus laevis
AAN77160
I
0.794
AAI69923
Xenopus laevis
AAI69923
I
0.794
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.770
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.759
KHSRP
Dasypus novemcinctus
ENSDNOG00000009590
I
0.751
KHSRP
Ornithorhynchus anatinus
ENSOANG00000000261
I
0.717
KHSRP
Echinops telfairi
ENSETEG00000004793
I
0.716
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.716
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.716
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.716
FUBP1
Homo sapiens
ENSG00000162613
I
0.716
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.716
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.712
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.712
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.712
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.712
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.712
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.712
khsrp
Xenopus tropicalis
ENSXETG00000021862
I
0.712
FUBP1
Equus caballus
ENSECAG00000010867
I
0.712
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.712
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.712
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.712
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.712
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.712
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.712
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.712
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.712
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.712
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.712
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.709
ENSPPYG00000019172
Pongo pygmaeus
ENSPPYG00000019172
I
0.708
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.704
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.704
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.704
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.704
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.703
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.700