AMAG_10429 (Allomyces macrogynus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AMAG_10429 T28027_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.743
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AMAG_10429T0 RRM 14 84
AMAG_10429T0 RRM 101 172

Links

Other RRM family RBPs
Other Allomyces macrogynus RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_03157 Allomyces macrogynus AMAG_03157 I 1.000
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.769
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.755
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.755
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.755
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.755
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.755
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.755
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.755
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.755
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.755
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.755
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.755
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.755
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.755
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.755
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.755
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.755
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.755
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.755
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.755
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.755
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.755
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.755
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.755
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.755
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.755
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.755
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.755
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.755
LOC100054350 Equus caballus ENSECAG00000024737 I 0.755
sf3b4 Danio rerio ENSDARG00000018574 D 0.755
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.755
SF3B4 Gallus gallus ENSGALG00000013352 I 0.755
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.755
SF3B4 Homo sapiens ENSG00000143368 I 0.755
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.755
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.748
ISCW010601 Ixodes scapularis ISCW010601 I 0.748
AAH45264 Xenopus laevis AAH45264 I 0.748
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.748
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.748
AAH77458 Xenopus laevis AAH77458 I 0.748
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.741
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.741
Smp_067420 Schistosoma mansoni Smp_067420 D 0.741
GJ15655 Drosophila virilis FBgn0202845 I 0.734
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.734
GI16317 Drosophila mojavensis FBgn0139065 I 0.734
GH17589 Drosophila grimshawi FBgn0125059 I 0.734
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.727
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.727
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.727
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.727
AAEL013795 Aedes aegypti AAEL013795 I 0.727
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.727
AGAP001538 Anopheles gambiae AGAP001538 I 0.727
GE16738 Drosophila yakuba FBgn0234234 I 0.727
PHUM263440 Pediculus humanus PHUM263440 I 0.727
GK19717 Drosophila willistoni FBgn0221715 I 0.727
GL21313 Drosophila persimilis FBgn0158906 I 0.727
GF20385 Drosophila ananassae FBgn0097392 I 0.727
GG19577 Drosophila erecta FBgn0111779 I 0.727
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.724
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.720
Spx Drosophila melanogaster FBgn0015818 I 0.720
GM12470 Drosophila sechellia FBgn0167407 I 0.720
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.720
MDP0000320945 Malus x domestica MDP0000320945 I 0.713
MDP0000131129 Malus x domestica MDP0000131129 I 0.713
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.713
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.713
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.713
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.706
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.706
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.706
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.706
30183.m001303 Ricinus communis 30183.m001303 I 0.706
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.706
CJA19238 Caenorhabditis japonica CJA19238 I 0.706
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.706
PK08238.1 Cannabis sativa PK08238.1 I 0.706