gw1.3.260.1 (Chlorella NC64A)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.3.260.1 T53230_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.790
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.3.260.1 RRM 24 94
gw1.3.260.1 RRM 111 182

Links

Other RRM family RBPs
Other Chlorella NC64A RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK08238.1 Cannabis sativa PK08238.1 I 0.825
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.818
MDP0000131129 Malus x domestica MDP0000131129 I 0.818
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.818
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.818
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.818
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.818
MDP0000320945 Malus x domestica MDP0000320945 I 0.818
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.811
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.811
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.811
ppa007508m Prunus persica ppa007508m I 0.804
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.804
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.804
SB01G020190 Sorghum bicolor Sb01g020190 I 0.804
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.797
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.797
30183.m001303 Ricinus communis 30183.m001303 I 0.797
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.790
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.790
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.790
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.790
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.790
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.769
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.748
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.741
GJ15655 Drosophila virilis FBgn0202845 I 0.741
AAEL013795 Aedes aegypti AAEL013795 I 0.741
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.741
GI16317 Drosophila mojavensis FBgn0139065 I 0.741
GH17589 Drosophila grimshawi FBgn0125059 I 0.741
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.741
GE16738 Drosophila yakuba FBgn0234234 I 0.734
GK19717 Drosophila willistoni FBgn0221715 I 0.734
GF20385 Drosophila ananassae FBgn0097392 I 0.734
GG19577 Drosophila erecta FBgn0111779 I 0.734
GL21313 Drosophila persimilis FBgn0158906 I 0.734
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.734
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.734
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.734
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.734
AGAP001538 Anopheles gambiae AGAP001538 I 0.734
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.734
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.734
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.727
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.727
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.727
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.727
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.727
Spx Drosophila melanogaster FBgn0015818 I 0.727
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.727
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.727
PHUM263440 Pediculus humanus PHUM263440 I 0.727
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.727
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.727
ISCW010601 Ixodes scapularis ISCW010601 I 0.727
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.727
GM12470 Drosophila sechellia FBgn0167407 I 0.727
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.727
SF3B4 Homo sapiens ENSG00000143368 I 0.727
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.727
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.727
SF3B4 Gallus gallus ENSGALG00000013352 I 0.727
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.727
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.727
sf3b4 Danio rerio ENSDARG00000018574 D 0.727
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.727
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.727
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.727
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.727
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.727
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.727
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.727
LOC100054350 Equus caballus ENSECAG00000024737 I 0.727
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.727
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.727
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.727
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.727
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.727
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.727
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.727
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.727
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.727
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.727
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.727
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.727
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.720
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.720
AAH77458 Xenopus laevis AAH77458 I 0.720
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.720
AAH45264 Xenopus laevis AAH45264 I 0.720
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.720
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.720
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.720
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.720
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.720
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.713
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.713
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.710
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.706
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.706
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.706