CJA07020 (Caenorhabditis japonica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CJA07020 T34118_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CJA07020 RRM 28 96
CJA07020 RRM 336 406

Links

Other RRM family RBPs
Other Caenorhabditis japonica RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOAG_05508 Loa loa LOAG_05508 I 0.800
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.779
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.771
CELF6 Oryzias latipes ENSORLG00000013392 I 0.771
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.771
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.764
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.764
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.764
GI13095 Drosophila mojavensis FBgn0135852 I 0.757
GM24582 Drosophila sechellia FBgn0179445 I 0.757
GF10965 Drosophila ananassae FBgn0088005 I 0.757
GH14684 Drosophila grimshawi FBgn0122160 I 0.757
GG13757 Drosophila erecta FBgn0106020 I 0.757
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.757
bru-3 Drosophila melanogaster FBgn0262350 D 0.757
GD12651 Drosophila simulans FBgn0184378 I 0.757
GE20053 Drosophila yakuba FBgn0237378 I 0.757
GJ13842 Drosophila virilis FBgn0201061 I 0.757
GK17101 Drosophila willistoni FBgn0219100 I 0.757
AGAP004950 Anopheles gambiae AGAP004950 I 0.750
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.750
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.750
AAEL014033 Aedes aegypti AAEL014033 I 0.750
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.750
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.750
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.743
PHUM315130 Pediculus humanus PHUM315130 I 0.743
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.736
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.736
Celf6 Mus musculus ENSMUSG00000032297 I 0.736
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.736
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.736
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.736
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.730
BRUNOL6 Homo sapiens ENSG00000140488 D 0.729
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.729
HEXA Macaca mulatta ENSMMUG00000010687 I 0.729
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.729
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.729
GL21647 Drosophila persimilis FBgn0159240 I 0.729
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.729
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.729
62054 Helobdella robusta 62054 I 0.721
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.721
Smp_041280 Schistosoma mansoni Smp_041280 I 0.721
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.714
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.707
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.707