CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF1
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCHOG00000004196
T35269_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000003711
RRM
18
88
MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM
ENSCHOP00000003711
RRM
110
178
LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS
ENSCHOP00000003711
RRM
403
444
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF1
Vicugna pacos
ENSVPAG00000000336
N
0.854
Ame_R009875
Ailuropoda melanoleuca
Ame_R009875
N
0.854
CELF1
Homo sapiens
ENSG00000149187
N
0.854
CELF1
Tursiops truncatus
ENSTTRG00000014157
N
0.854
CELF1
Macaca mulatta
ENSMMUG00000011657
N
0.854
LOC100392717
Callithrix jacchus
ENSCJAG00000020133
N
0.854
CELF1
Oryctolagus cuniculus
ENSOCUG00000001311
N
0.854
CELF1
Equus caballus
ENSECAG00000007741
N
0.854
CELF1
Loxodonta africana
ENSLAFG00000003484
N
0.854
CELF1
Cavia porcellus
ENSCPOG00000007871
N
0.854
CELF1
Canis familiaris
ENSCAFG00000008452
N
0.854
A7MB95_BOVIN
Bos taurus
ENSBTAG00000002520
N
0.854
ENSPPYG00000003302
Pongo pygmaeus
ENSPPYG00000003302
N
0.844
Celf1
Mus musculus
ENSMUSG00000005506
N
0.844
Cugbp1
Rattus norvegicus
ENSRNOG00000010379
N
0.844
CELF1
Anolis carolinensis
ENSACAG00000002114
N
0.840
CELF1
Ornithorhynchus anatinus
ENSOANG00000007896
N
0.840
CELF1
Ochotona princeps
ENSOPRG00000003239
N
0.840
Celf1
Dipodomys ordii
ENSDORG00000013721
N
0.840
CELF1
Macropus eugenii
ENSMEUG00000007763
N
0.840
CELF1
Monodelphis domestica
ENSMODG00000019913
N
0.840
CUGBP1
Taeniopygia guttata
ENSTGUG00000010377
N
0.830
CELF1_CHICK
Gallus gallus
ENSGALG00000008097
N
0.830
CELF1
Meleagris gallopavo
ENSMGAG00000010629
N
0.830
CELF1
Procavia capensis
ENSPCAG00000002631
N
0.816
CELF1
Gasterosteus aculeatus
ENSGACG00000014226
N
0.803
CELF1
Microcebus murinus
ENSMICG00000007157
N
0.802
celf1
Xenopus tropicalis
ENSXETG00000009044
N
0.797
AAC41243
Xenopus laevis
AAC41243
N
0.792
AAI08575
Xenopus laevis
AAI08575
N
0.792
O57406
Xenopus laevis
O57406
N
0.792
AAH57743
Xenopus laevis
AAH57743
N
0.788
AAH70706
Xenopus laevis
AAH70706
N
0.788
Q6PF35
Xenopus laevis
Q6PF35
N
0.788
Cugbp2
Rattus norvegicus
ENSRNOG00000023661
N
0.775
CUGBP2-1
Taeniopygia guttata
ENSTGUG00000002136
N
0.775
CELF2
Anolis carolinensis
ENSACAG00000007661
N
0.775
Ame_R017712
Ailuropoda melanoleuca
Ame_R017712
N
0.775
CELF2
Canis familiaris
ENSCAFG00000004973
N
0.775
CELF2
Tupaia belangeri
ENSTBEG00000007939
N
0.775
ENSPPYG00000002083
Pongo pygmaeus
ENSPPYG00000002083
N
0.775
CELF2_CHICK
Gallus gallus
ENSGALG00000006713
N
0.775
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.775
CELF2
Microcebus murinus
ENSMICG00000007867
N
0.775
CELF2
Homo sapiens
ENSG00000048740
N
0.775
CELF2
Erinaceus europaeus
ENSEEUG00000005658
N
0.775
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.775
CELF2
Cavia porcellus
ENSCPOG00000012567
N
0.775
CELF2
Equus caballus
ENSECAG00000006649
N
0.775
CELF2
Macaca mulatta
ENSMMUG00000011468
N
0.775
CELF2
Loxodonta africana
ENSLAFG00000013612
N
0.775
CELF2
Oryctolagus cuniculus
ENSOCUG00000004961
N
0.775
CELF2
Ochotona princeps
ENSOPRG00000011502
N
0.775
CELF2
Pan troglodytes
ENSPTRG00000002284
N
0.775
Celf2
Mus musculus
ENSMUSG00000002107
N
0.775
AAH45035
Xenopus laevis
AAH45035
N
0.770
Q7ZXE2
Xenopus laevis
Q7ZXE2
N
0.770
AAB09041
Xenopus laevis
AAB09041
N
0.770
celf2
Xenopus tropicalis
ENSXETG00000021992
N
0.770
celf1
Danio rerio
ENSDARG00000005315
N
0.769
CELF2
Takifugu rubripes
ENSTRUG00000010147
N
0.765
CELF2
Tetraodon nigroviridis
ENSTNIG00000007201
N
0.765
CELF1
Takifugu rubripes
ENSTRUG00000001711
N
0.764
celf2
Danio rerio
ENSDARG00000002131
N
0.761
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.761
ACH69783
Xenopus laevis
ACH69783
N
0.745
CELF2
Choloepus hoffmanni
ENSCHOG00000002945
N
0.729
CELF1
Myotis lucifugus
ENSMLUG00000016631
N
0.720
CELF2
Gasterosteus aculeatus
ENSGACG00000004426
N
0.720
CELF2
Tetraodon nigroviridis
ENSTNIG00000016009
N
0.715
CELF2
Takifugu rubripes
ENSTRUG00000016905
N
0.715
CELF1
Pan troglodytes
ENSPTRG00000003568
N
0.712
CELF1
Erinaceus europaeus
ENSEEUG00000009782
N
0.712
CELF1
Sorex araneus
ENSSARG00000003207
N
0.712
CELF1
Tupaia belangeri
ENSTBEG00000005140
N
0.708
CELF1
Dasypus novemcinctus
ENSDNOG00000009523
N
0.706
CELF2
Oryzias latipes
ENSORLG00000003894
N
0.706