CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF2
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000004426
T37422_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000005846
RRM
62
133
MFVGQIPRAWSETELKELFEPFGAVHQINILRDRTQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLSGMH
ENSGACP00000005846
RRM
156
224
LFIGMISKKYGENEIRMMFLSFGQMEECRILRGPDGQSRGCAFVTFSTRAMAQNAIKTMHHSQTMEGCS
ENSGACP00000005846
RRM
456
526
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF2
Takifugu rubripes
ENSTRUG00000016905
N
0.962
CELF2
Tetraodon nigroviridis
ENSTNIG00000016009
N
0.958
CELF2
Oryzias latipes
ENSORLG00000003894
N
0.934
CELF2
Takifugu rubripes
ENSTRUG00000010147
N
0.897
CELF2
Tetraodon nigroviridis
ENSTNIG00000007201
N
0.897
ENSPPYG00000002083
Pongo pygmaeus
ENSPPYG00000002083
N
0.897
Cugbp2
Rattus norvegicus
ENSRNOG00000023661
N
0.897
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.897
CELF2
Ochotona princeps
ENSOPRG00000011502
N
0.897
CELF2
Cavia porcellus
ENSCPOG00000012567
N
0.897
CELF2
Canis familiaris
ENSCAFG00000004973
N
0.897
CUGBP2-1
Taeniopygia guttata
ENSTGUG00000002136
N
0.897
CELF2
Erinaceus europaeus
ENSEEUG00000005658
N
0.897
Ame_R017712
Ailuropoda melanoleuca
Ame_R017712
N
0.897
CELF2
Anolis carolinensis
ENSACAG00000007661
N
0.897
CELF2_CHICK
Gallus gallus
ENSGALG00000006713
N
0.897
CELF2
Oryctolagus cuniculus
ENSOCUG00000004961
N
0.897
CELF2
Tupaia belangeri
ENSTBEG00000007939
N
0.897
CELF2
Pan troglodytes
ENSPTRG00000002284
N
0.897
CELF2
Equus caballus
ENSECAG00000006649
N
0.897
CELF2
Loxodonta africana
ENSLAFG00000013612
N
0.897
CELF2
Homo sapiens
ENSG00000048740
N
0.897
CELF2
Microcebus murinus
ENSMICG00000007867
N
0.897
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.897
CELF2
Macaca mulatta
ENSMMUG00000011468
N
0.897
Celf2
Mus musculus
ENSMUSG00000002107
N
0.897
celf2
Danio rerio
ENSDARG00000002131
N
0.893
AAH45035
Xenopus laevis
AAH45035
N
0.892
AAB09041
Xenopus laevis
AAB09041
N
0.892
Q7ZXE2
Xenopus laevis
Q7ZXE2
N
0.892
celf2
Xenopus tropicalis
ENSXETG00000021992
N
0.892
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.873
CELF1
Macropus eugenii
ENSMEUG00000007763
N
0.859
CELF1
Equus caballus
ENSECAG00000007741
N
0.859
CELF1
Loxodonta africana
ENSLAFG00000003484
N
0.859
CELF1
Vicugna pacos
ENSVPAG00000000336
N
0.859
CELF1
Tursiops truncatus
ENSTTRG00000014157
N
0.859
A7MB95_BOVIN
Bos taurus
ENSBTAG00000002520
N
0.859
CELF1
Anolis carolinensis
ENSACAG00000002114
N
0.859
CELF1
Canis familiaris
ENSCAFG00000008452
N
0.859
CELF1
Cavia porcellus
ENSCPOG00000007871
N
0.859
CELF1
Monodelphis domestica
ENSMODG00000019913
N
0.859
Celf1
Mus musculus
ENSMUSG00000005506
N
0.859
CELF1
Oryctolagus cuniculus
ENSOCUG00000001311
N
0.859
CELF1
Macaca mulatta
ENSMMUG00000011657
N
0.859
LOC100392717
Callithrix jacchus
ENSCJAG00000020133
N
0.859
CELF1
Homo sapiens
ENSG00000149187
N
0.859
Ame_R009875
Ailuropoda melanoleuca
Ame_R009875
N
0.859
Cugbp1
Rattus norvegicus
ENSRNOG00000010379
N
0.859
ACH69783
Xenopus laevis
ACH69783
N
0.857
CELF1
Ornithorhynchus anatinus
ENSOANG00000007896
N
0.854
CELF1_CHICK
Gallus gallus
ENSGALG00000008097
N
0.850
CUGBP1
Taeniopygia guttata
ENSTGUG00000010377
N
0.850
ENSPPYG00000003302
Pongo pygmaeus
ENSPPYG00000003302
N
0.850
CELF1
Meleagris gallopavo
ENSMGAG00000010629
N
0.850
CELF1
Ochotona princeps
ENSOPRG00000003239
N
0.845
Celf1
Dipodomys ordii
ENSDORG00000013721
N
0.845
CELF2
Choloepus hoffmanni
ENSCHOG00000002945
N
0.841
O57406
Xenopus laevis
O57406
N
0.836
AAI08575
Xenopus laevis
AAI08575
N
0.836
CELF1
Takifugu rubripes
ENSTRUG00000001711
N
0.836
AAC41243
Xenopus laevis
AAC41243
N
0.836
celf1
Xenopus tropicalis
ENSXETG00000009044
N
0.836
celf1
Danio rerio
ENSDARG00000005315
N
0.831
CELF1
Procavia capensis
ENSPCAG00000002631
N
0.826
AAH57743
Xenopus laevis
AAH57743
N
0.822
AAH70706
Xenopus laevis
AAH70706
N
0.822
Q6PF35
Xenopus laevis
Q6PF35
N
0.822
CELF1
Microcebus murinus
ENSMICG00000007157
N
0.817
CELF1
Gasterosteus aculeatus
ENSGACG00000014226
N
0.752
CELF2
Procavia capensis
ENSPCAG00000010882
N
0.751
CELF1
Erinaceus europaeus
ENSEEUG00000009782
N
0.750
CELF1
Pan troglodytes
ENSPTRG00000003568
N
0.750
CELF1
Sorex araneus
ENSSARG00000003207
N
0.750
CELF2
Macropus eugenii
ENSMEUG00000015276
N
0.746
Celf2
Dipodomys ordii
ENSDORG00000006455
N
0.738
e_gw.91.28.1
Branchiostoma floridae
e_gw.91.28.1
I
0.737
CELF2
Monodelphis domestica
ENSMODG00000016763
N
0.737
CELF1
Dasypus novemcinctus
ENSDNOG00000009523
N
0.736
CELF2
Oryzias latipes
ENSORLG00000017111
N
0.734
CELF2
Tursiops truncatus
ENSTTRG00000014665
N
0.732
CELF1
Tupaia belangeri
ENSTBEG00000005140
N
0.728
CELF2
Tarsius syrichta
ENSTSYG00000005118
N
0.723
CELF2
Vicugna pacos
ENSVPAG00000009360
N
0.723
CELF1
Choloepus hoffmanni
ENSCHOG00000004196
N
0.720
CELF1
Tarsius syrichta
ENSTSYG00000003866
N
0.709
CELF1
Pteropus vampyrus
ENSPVAG00000007340
N
0.709
CELF1
Myotis lucifugus
ENSMLUG00000016631
N
0.706
CELF1
Gorilla gorilla
ENSGGOG00000004106
N
0.701
e_gw1.172.82.1
Capitella teleta
e_gw1.172.82.1
I
0.700