PASA_GEN_0100181 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PASA_GEN_0100181 T53844_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_0100181 RRM 16 86

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.887
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.873
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.859
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.859
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.859
CSTF2 Felis catus ENSFCAG00000007000 N 0.831
CSTF2 Homo sapiens ENSG00000101811 N 0.831
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.831
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.831
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.831
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.831
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.831
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.831
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.831
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.831
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.831
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.831
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.831
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.831
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.831
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.831
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.831
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.831
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.831
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.831
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.831
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.831
Cstf2 Mus musculus ENSMUSG00000031256 N 0.831
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.831
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.831
AAH80037 Xenopus laevis AAH80037 N 0.831
AAB50269 Xenopus laevis AAB50269 N 0.831
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.831
AAH41291 Xenopus laevis AAH41291 N 0.831
GE25546 Drosophila yakuba FBgn0242611 N 0.817
CstF-64 Drosophila melanogaster FBgn0027841 N 0.817
Cstf2t Mus musculus ENSMUSG00000053536 N 0.817
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.817
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.817
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.817
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.817
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.817
GF16912 Drosophila ananassae FBgn0093932 N 0.817
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.817
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.817
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.817
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.817
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.817
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.817
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.817
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.817
CSTF2T Sorex araneus ENSSARG00000002013 N 0.817
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.817
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.817
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.817
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.817
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.817
GK14167 Drosophila willistoni FBgn0216173 N 0.817
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.817
GL24357 Drosophila persimilis FBgn0161947 N 0.817
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.817
AAEL013869 Aedes aegypti AAEL013869 N 0.817
GI23336 Drosophila mojavensis FBgn0146063 N 0.817
cstf2 Danio rerio ENSDARG00000044009 N 0.817
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.817
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.817
GH18352 Drosophila grimshawi FBgn0125820 N 0.817
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.817
CSTF2T Felis catus ENSFCAG00000013011 N 0.817
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.817
GM17877 Drosophila sechellia FBgn0172784 N 0.817
GJ10336 Drosophila virilis FBgn0197622 N 0.817
GD19237 Drosophila simulans FBgn0190742 N 0.817
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.817
GG22991 Drosophila erecta FBgn0115148 N 0.817
CSTF2T Homo sapiens ENSG00000177613 N 0.817
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.817
ISCW015573 Ixodes scapularis ISCW015573 N 0.803
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.803
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.803
s_451557 Phytophthora sojae s_451557 N 0.803
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.803
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.803
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.803
CSTF2 Equus caballus ENSECAG00000009325 N 0.803
AGAP010918 Anopheles gambiae AGAP010918 N 0.803
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.789
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.789
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.789
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.789
PHUM441150 Pediculus humanus PHUM441150 N 0.789
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.789
PITG_14249 Phytophthora infestans PITG_14249 N 0.789
AGAP004414 Anopheles gambiae AGAP004414 N 0.775
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.775
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.775
28644.m000926 Ricinus communis 28644.m000926 N 0.775
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.775
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.775
mgf002767m Mimulus guttatus mgf002767m N 0.761
mgf012202m Mimulus guttatus mgf012202m N 0.761
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.761
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.761
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.761
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.761
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.761
ppa004010m Prunus persica ppa004010m N 0.761
PK22244.1 Cannabis sativa PK22244.1 N 0.761
MDP0000283046 Malus x domestica MDP0000283046 N 0.761
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.761
MDP0000142436 Malus x domestica MDP0000142436 N 0.761
SB05G004860 Sorghum bicolor Sb05g004860 N 0.746
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.746
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.746
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.746
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.746
112541 Helobdella robusta 112541 N 0.746
MDP0000208337 Malus x domestica MDP0000208337 N 0.732
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.732
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.732
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.718
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.718
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.718
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.718
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.718
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.704
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.704