CR293507.1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000022415 T36105_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.847
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.847
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.847
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.847
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000031512 RRM 12 83
ENSDARP00000091866 RRM 12 83

Links

Other RRM family RBPs
Other Danio rerio RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.861
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.861
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.861
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.861
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.849
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.849
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.847
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.847
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.847
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.847
SRSF12 Homo sapiens ENSG00000154548 I 0.847
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.836
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.836
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.836
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.836
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.833
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.833
AAH46695 Xenopus laevis AAH46695 I 0.833
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.833
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.833
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.833
Srsf12 Mus musculus ENSMUSG00000054679 I 0.833
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.833
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.833
BX511012.1 Homo sapiens ENSG00000215699 I 0.822
Srsf10 Mus musculus ENSMUSG00000028676 I 0.822
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.822
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.822
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.822
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.822
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.822
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.822
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.822
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.822
Fusip1 Homo sapiens ENSG00000188529 D 0.822
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.822
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.822
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.822
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.822
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.822
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.822
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.819
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.808
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.808
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.806
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.806
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.806
AAH84231 Xenopus laevis AAH84231 I 0.806
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.781
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.778
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.778
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.778
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.764
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.764
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.764
LOC100070965 Equus caballus ENSECAG00000019135 I 0.764
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.764
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.764
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.764
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.764
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.764
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.753
SRSF12 Sorex araneus ENSSARG00000007795 I 0.750
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.750
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.750
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.750
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.750
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.750
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.747
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.736
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.736
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.736
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.726
ENSCJAG00000002933 Callithrix jacchus ENSCJAG00000002933 I 0.722
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.722
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.722
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.708