D3ZB38_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000007992 T41056_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		1.000
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		1.000
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		1.000
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000011154 RRM 12 82
ENSRNOP00000011988 RRM 12 83
ENSRNOP00000062605 RRM 12 83

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 1.000
Fusip1 Homo sapiens ENSG00000188529 D 1.000
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 1.000
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 1.000
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 1.000
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 1.000
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 1.000
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 1.000
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 1.000
BX511012.1 Homo sapiens ENSG00000215699 I 1.000
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 1.000
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 1.000
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 1.000
Srsf10 Mus musculus ENSMUSG00000028676 I 1.000
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 1.000
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 1.000
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.972
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.972
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.972
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.972
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.972
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.959
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.959
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.959
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.959
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.958
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.958
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.917
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.917
AAH46695 Xenopus laevis AAH46695 I 0.903
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.889
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.889
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.889
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.889
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.889
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.889
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.889
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.875
Srsf12 Mus musculus ENSMUSG00000054679 I 0.875
SRSF12 Homo sapiens ENSG00000154548 I 0.875
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.875
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.875
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.875
AAH84231 Xenopus laevis AAH84231 I 0.875
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.861
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.861
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.859
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.847
CR293507.1 Danio rerio ENSDARG00000022415 I 0.847
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.847
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.845
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.840
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.836
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.836
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.833
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.831
ENSOCUG00000028110 Oryctolagus cuniculus ENSOCUG00000028110 I 0.819
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.819
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.819
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.817
ENSCJAG00000002933 Callithrix jacchus ENSCJAG00000002933 I 0.792
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.778
LOC100070965 Equus caballus ENSECAG00000019135 I 0.764
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.764
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.764
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.764
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.750
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.750
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.750
SRSF12 Sorex araneus ENSSARG00000007795 I 0.750
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.750
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.750
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.750
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.750
Ame_R019011 Ailuropoda melanoleuca Ame_R019011 I 0.736
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.736
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.736
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.722
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.722