AAH84231 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH84231 T59572_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.887
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.887
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.887
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.887
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH84231 RRM 12 82

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Srsf12 Mus musculus ENSMUSG00000054679 I 0.944
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.944
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.930
SRSF12 Homo sapiens ENSG00000154548 I 0.930
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.917
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.917
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.917
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.917
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.903
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.903
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.903
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.903
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.893
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.889
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.875
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.863
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.863
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.863
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.863
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.861
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.861
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.861
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.861
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.861
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.861
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.861
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.861
Fusip1 Homo sapiens ENSG00000188529 D 0.861
Srsf10 Mus musculus ENSMUSG00000028676 I 0.861
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.861
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.861
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.861
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.861
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.861
BX511012.1 Homo sapiens ENSG00000215699 I 0.861
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.861
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.861
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.861
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.859
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.847
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.845
AAH46695 Xenopus laevis AAH46695 I 0.845
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.836
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.836
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.833
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.833
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.833
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.819
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.819
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.819
CR293507.1 Danio rerio ENSDARG00000022415 I 0.806
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.803
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.803
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.792
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.792
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.792
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.792
LOC100070965 Equus caballus ENSECAG00000019135 I 0.792
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.789
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.778
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.778
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.778
SRSF12 Sorex araneus ENSSARG00000007795 I 0.778
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.778
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.778
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.778
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.775
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.764
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.761
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.750
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.750
ENSOCUG00000028110 Oryctolagus cuniculus ENSOCUG00000028110 I 0.746
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.746
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.736
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.736
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.736
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.736
ENSCJAG00000002933 Callithrix jacchus ENSCJAG00000002933 I 0.732