ENSCPOG00000024533 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000024533 T35912_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.973
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.973
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.973
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.973
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000020251 RRM 12 84

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 1.000
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 1.000
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 1.000
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.959
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.959
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.959
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.959
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.959
Srsf10 Mus musculus ENSMUSG00000028676 I 0.959
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.959
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.959
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.959
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.959
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.959
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.959
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.959
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.959
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.959
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.959
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.959
Fusip1 Homo sapiens ENSG00000188529 D 0.959
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.959
BX511012.1 Homo sapiens ENSG00000215699 I 0.959
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.932
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.932
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.932
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.918
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.918
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.904
AAH46695 Xenopus laevis AAH46695 I 0.904
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.890
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.877
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.877
Srsf12 Mus musculus ENSMUSG00000054679 I 0.877
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.877
SRSF12 Homo sapiens ENSG00000154548 I 0.877
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.863
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.863
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.863
AAH84231 Xenopus laevis AAH84231 I 0.863
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.863
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.863
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.853
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.849
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.849
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.849
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.849
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.849
CR293507.1 Danio rerio ENSDARG00000022415 I 0.836
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.836
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.836
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.836
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.836
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.836
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.822
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.808
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.808
ENSOCUG00000028110 Oryctolagus cuniculus ENSOCUG00000028110 I 0.808
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.808
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.781
ENSCJAG00000002933 Callithrix jacchus ENSCJAG00000002933 I 0.767
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.753
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.740
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.740
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.740
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.740
LOC100070965 Equus caballus ENSECAG00000019135 I 0.740
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.740
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.726
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.726
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.726
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.726
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.726
SRSF12 Sorex araneus ENSSARG00000007795 I 0.726
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.726
Ame_R019011 Ailuropoda melanoleuca Ame_R019011 I 0.726
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.726
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.726
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.712