srsf12 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000005385 T42837_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.840
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.840
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.840
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.840
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000011851 RRM 12 86

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH84231 Xenopus laevis AAH84231 I 0.893
Srsf12 Mus musculus ENSMUSG00000054679 I 0.880
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.880
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.880
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.880
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.880
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.880
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.880
SRSF12 Homo sapiens ENSG00000154548 I 0.880
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.867
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.867
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.867
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.853
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.853
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.853
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.853
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.853
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.853
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.840
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.840
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.840
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.840
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.840
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.840
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.840
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.840
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.840
Srsf10 Mus musculus ENSMUSG00000028676 I 0.840
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.840
Fusip1 Homo sapiens ENSG00000188529 D 0.840
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.840
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.840
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.840
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.840
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.840
BX511012.1 Homo sapiens ENSG00000215699 I 0.840
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.827
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.827
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.827
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.813
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.813
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.813
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.813
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.813
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.813
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.813
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.800
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.800
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.773
AAH46695 Xenopus laevis AAH46695 I 0.773
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.760
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.760
SRSF12 Loxodonta africana ENSLAFG00000005458 I 0.747
SRSF12 Gorilla gorilla ENSGGOG00000024850 I 0.747
Ame_R010918 Ailuropoda melanoleuca Ame_R010918 I 0.747
CR293507.1 Danio rerio ENSDARG00000022415 I 0.747
LOC100070965 Equus caballus ENSECAG00000019135 I 0.747
SRSF12 Cavia porcellus ENSCPOG00000010917 I 0.747
SRSF12 Spermophilus tridecemlineatus ENSSTOG00000007170 I 0.733
SRSF12 Sorex araneus ENSSARG00000007795 I 0.733
ENSTBEG00000015120 Tupaia belangeri ENSTBEG00000015120 I 0.733
SRSF12 Tarsius syrichta ENSTSYG00000001269 I 0.733
SRSF12 Myotis lucifugus ENSMLUG00000001545 I 0.733
SRSF12 Otolemur garnettii ENSOGAG00000006421 I 0.733
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.733
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.733
SRSF12 Pteropus vampyrus ENSPVAG00000001046 I 0.733
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.720
ENSOCUG00000028110 Oryctolagus cuniculus ENSOCUG00000028110 I 0.720
SRSF12 Ochotona princeps ENSOPRG00000016052 I 0.720
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.707
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.707
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.707
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.707
ENSTBEG00000008665 Tupaia belangeri ENSTBEG00000008665 I 0.707