tardbp (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000040031 T36138_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.767
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058554 RRM 112 179
ENSDARP00000058554 RRM 199 258

Links

Other RRM family RBPs
Other Danio rerio RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
tardbpl Danio rerio ENSDARG00000004452 I 0.831
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.822
TARDBP Oryzias latipes ENSORLG00000005188 I 0.815
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.815
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.814
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.800
TARDBP Oryzias latipes ENSORLG00000003593 I 0.792
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.785
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.785
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.785
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.785
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.777
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.777
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.777
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.777
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.777
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.777
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.777
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.777
LOC100051482 Equus caballus ENSECAG00000008338 I 0.777
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.777
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.777
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.777
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.777
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.777
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.777
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.777
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.769
TARDBP Procavia capensis ENSPCAG00000010442 I 0.769
TARDBP Felis catus ENSFCAG00000000050 I 0.769
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.769
TARDBP Echinops telfairi ENSETEG00000004358 I 0.769
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.769
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.762
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.762
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.762
AAM33247 Xenopus laevis AAM33247 I 0.762
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.762
Tardbp Mus musculus ENSMUSG00000041459 I 0.762
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.754
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.754
TARDBP Homo sapiens ENSG00000120948 D 0.754
AAH44271 Xenopus laevis AAH44271 I 0.754
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.754
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.746
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.711
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.711