LOC100405373 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000002381 T35480_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.975
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000004315 RRM 16 58
ENSCJAP00000004315 RRM 77 128
ENSCJAP00000004338 RRM 72 125
ENSCJAP00000004352 RRM 106 174
ENSCJAP00000004352 RRM 193 244

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.975
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.975
TARDBP Homo sapiens ENSG00000120948 D 0.975
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.975
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.959
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.959
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.959
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.950
TARDBP Procavia capensis ENSPCAG00000010442 I 0.950
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.950
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.950
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.950
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.950
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.950
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.950
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.950
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.950
LOC100051482 Equus caballus ENSECAG00000008338 I 0.950
TARDBP Echinops telfairi ENSETEG00000004358 I 0.950
TARDBP Felis catus ENSFCAG00000000050 I 0.950
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.950
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.950
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.942
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.942
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.942
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.942
Tardbp Mus musculus ENSMUSG00000041459 I 0.942
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.942
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.934
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.934
AAM33247 Xenopus laevis AAM33247 I 0.926
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.926
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.917
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.917
TARDBP Oryzias latipes ENSORLG00000003593 I 0.901
tardbpl Danio rerio ENSDARG00000004452 I 0.901
AAH44271 Xenopus laevis AAH44271 I 0.893
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.893
TARDBP Microcebus murinus ENSMICG00000003838 I 0.887
TARDBP Otolemur garnettii ENSOGAG00000016721 I 0.887
TARDBP Pteropus vampyrus ENSPVAG00000014773 N 0.876
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.869
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.868
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.868
TARDBP Oryzias latipes ENSORLG00000005188 I 0.868
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.861
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.852
tardbp Danio rerio ENSDARG00000040031 I 0.777
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.754
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.746
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.740
ENSMMUG00000003940 Macaca mulatta ENSMMUG00000003940 I 0.730
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.720
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.718
GK15864 Drosophila willistoni FBgn0217867 I 0.705