TARDBP (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000015173 T42135_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.836
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018229 RRM 107 174
ENSTNIP00000018229 RRM 190 242

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.992
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.926
TARDBP Oryzias latipes ENSORLG00000005188 I 0.918
tardbpl Danio rerio ENSDARG00000004452 I 0.910
TARDBP Oryzias latipes ENSORLG00000003593 I 0.893
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.877
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.869
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.869
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.869
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.861
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.861
TARDBP Felis catus ENSFCAG00000000050 I 0.861
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.861
TARDBP Procavia capensis ENSPCAG00000010442 I 0.861
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.861
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.861
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.861
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.861
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.861
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.861
LOC100051482 Equus caballus ENSECAG00000008338 I 0.861
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.861
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.861
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.861
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.861
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.861
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.861
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.861
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.861
TARDBP Echinops telfairi ENSETEG00000004358 I 0.852
Tardbp Mus musculus ENSMUSG00000041459 I 0.852
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.852
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.852
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.852
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.852
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.852
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.844
AAM33247 Xenopus laevis AAM33247 I 0.844
TARDBP Homo sapiens ENSG00000120948 D 0.836
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.836
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.836
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.836
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.828
tardbp Danio rerio ENSDARG00000040031 I 0.822
AAH44271 Xenopus laevis AAH44271 I 0.811
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.772
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.754
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.746
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.726
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.715
GK15864 Drosophila willistoni FBgn0217867 I 0.705
PHUM575260 Pediculus humanus PHUM575260 I 0.701