Tardbp (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000012455 T41084_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000017278 RRM 106 174
ENSRNOP00000017278 RRM 193 244
ENSRNOP00000017922 RRM 106 174
ENSRNOP00000017922 RRM 193 244
ENSRNOP00000041889 RRM 106 174
ENSRNOP00000041889 RRM 193 244

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Tardbp Mus musculus ENSMUSG00000041459 I 1.000
TARDBP Felis catus ENSFCAG00000000050 I 0.975
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.975
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.967
TARDBP Procavia capensis ENSPCAG00000010442 I 0.967
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.967
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.967
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.967
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.959
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.959
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.959
LOC100051482 Equus caballus ENSECAG00000008338 I 0.959
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.959
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.959
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.959
TARDBP Echinops telfairi ENSETEG00000004358 I 0.959
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.959
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.959
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.959
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.959
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.959
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.950
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.950
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.950
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.942
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.942
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.934
AAM33247 Xenopus laevis AAM33247 I 0.934
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.934
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.926
TARDBP Homo sapiens ENSG00000120948 D 0.917
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.917
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.917
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.917
tardbpl Danio rerio ENSDARG00000004452 I 0.893
AAH44271 Xenopus laevis AAH44271 I 0.893
TARDBP Oryzias latipes ENSORLG00000003593 I 0.884
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.876
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.861
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.852
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.852
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.851
TARDBP Oryzias latipes ENSORLG00000005188 I 0.851
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.851
tardbp Danio rerio ENSDARG00000040031 I 0.762
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.748
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.746
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.738
ENSMMUG00000003940 Macaca mulatta ENSMMUG00000003940 I 0.730
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.728
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.726
TARDBP Pteropus vampyrus ENSPVAG00000014773 N 0.721
TARDBP Microcebus murinus ENSMICG00000003838 I 0.713
TARDBP Otolemur garnettii ENSOGAG00000016721 I 0.705
PHUM575260 Pediculus humanus PHUM575260 I 0.703