TARDBP (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000007124 T37447_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.844
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000009475 RRM 107 175
ENSGACP00000009475 RRM 194 246

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TARDBP Oryzias latipes ENSORLG00000005188 I 0.934
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.926
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.918
TARDBP Oryzias latipes ENSORLG00000003593 I 0.910
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.910
tardbpl Danio rerio ENSDARG00000004452 I 0.893
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.869
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.869
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.869
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.869
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.869
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.861
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.861
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.861
TARDBP Felis catus ENSFCAG00000000050 I 0.861
LOC100051482 Equus caballus ENSECAG00000008338 I 0.861
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.861
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.861
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.861
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.861
TARDBP Procavia capensis ENSPCAG00000010442 I 0.861
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.861
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.861
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.861
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.861
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.861
TARDBP Echinops telfairi ENSETEG00000004358 I 0.852
Tardbp Mus musculus ENSMUSG00000041459 I 0.852
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.852
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.852
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.852
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.852
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.844
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.844
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.844
AAM33247 Xenopus laevis AAM33247 I 0.844
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.844
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.844
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.844
TARDBP Homo sapiens ENSG00000120948 D 0.844
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.844
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.828
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.828
tardbp Danio rerio ENSDARG00000040031 I 0.815
AAH44271 Xenopus laevis AAH44271 I 0.811
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.746
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.738
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.734
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.712